Lammert Kooistra

Dr. Lammert Kooistra

Laboratory of Geo-information Science and Remote Sensing, Wageningen University, Droevendaalsesteeg 3, 6708PB Wageningen, The Netherlands
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Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 March 2015 in IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing
Verified
Journal Article
Closed access
CGCaroline Gevaert
Caroline Gevaert
JSJuha Suomalainen
Juha Suomalainen
JTJing Tang
Jing Tang
Lammert KooistraLammert Kooistra
Lammert Kooistra
Precision agriculture requires detailed crop status information at high spatial and temporal resolutions. Remote sensing can provide such information, but single sensor observations are often incapable of meeting all data requirements. Spectral-temporal response surfaces (STRSs) provide continuous reflectance spectra at high temporal intervals. This is the first study to combine multispectral satellite imagery (from Formosat-2) with hyperspectral imagery acquired with an unmanned aerial vehicle (UAV) to construct STRS. This study presents a novel STRS methodology which uses Bayesian theory to impute missing spectral information in the multispectral imagery and introduces observation uncertainties into the interpolations. This new method is compared to two earlier published methods for constructing STRS: a direct interpolation of the original data and a direct interpolation along the temporal dimension after imputation along the spectral dimension. The STRS derived through all three methods are compared to field measured reflectance spectra, leaf area index (LAI), and canopy chlorophyll of potato plants. The results indicate that the proposed Bayesian approach has the highest correlation (r = 0.953) and lowest RMSE (0.032) to field spectral reflectance measurements. Although the optimized soil-adjusted vegetation index (OSAVI) obtained from all methods have similar correlations to field data, the modified chlorophyll absorption in reflectance index (MCARI) obtained from the Bayesian STRS outperform the other two methods. A correlation of 0.83 with LAI and 0.77 with canopy chlorophyll measurements are obtained, compared to correlations of 0.27 and 0.09, respectively, for the directly interpolated STRS.

25 April 2017 in Remote Sensing
Verified
Journal Article
Open access
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JCJan Clevers
Jan Clevers
Lammert KooistraLammert Kooistra
Lammert Kooistra
MBMarnix M. M. Van Den Brande
Marnix M. M. Van Den Brande
Leaf area index (LAI) and chlorophyll content, at leaf and canopy level, are important variables for agricultural applications because of their crucial role in photosynthesis and in plant functioning. The goal of this study was to test the hypothesis that LAI, leaf chlorophyll content (LCC), and canopy chlorophyll content (CCC) of a potato crop can be estimated by vegetation indices for the first time using Sentinel-2 satellite images. In 2016 ten plots of 30 × 30 m were designed in a potato field with different fertilization levels. During the growing season approximately 10 daily radiometric field measurements were used to determine LAI, LCC, and CCC. These radiometric determinations were extensively calibrated against LAI2000 and chlorophyll meter (SPAD, soil plant analysis development) measurements for potato crops grown in the years 2010–2014. Results for Sentinel-2 showed that the weighted difference vegetation index (WDVI) using bands at 10 m spatial resolution can be used for estimating the LAI (R2 of 0.809; root mean square error of prediction (RMSEP) of 0.36). The ratio of the transformed chlorophyll in reflectance index and the optimized soil-adjusted vegetation index (TCARI/OSAVI) showed to be a good linear estimator of LCC at 20 m (R2 of 0.696; RMSEP of 0.062 g·m−2). The performance of the chlorophyll vegetation index (CVI) at 10 m spatial resolution was slightly worse (R2 of 0.656; RMSEP of 0.066 g·m−2) compared to TCARI/OSAVI. Finally, results showed that the green chlorophyll index (CIgreen) was an accurate and linear estimator of CCC at 10 m (R2 of 0.818; RMSEP of 0.29 g·m−2). Results for CIgreen were better than for the red-edge chlorophyll index (CIred-edge, R2 of 0.576, RMSE of 0.43 g·m−2). Our results show that Sentinel-2 bands at 10 m spatial resolution are suitable for estimating LAI, LCC, and CCC, avoiding the need for red-edge bands that are only available at 20 m. This is an important finding for applying Sentinel-2 data in precision agriculture.

7 December 2011 in IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing
Verified
Journal Article
Closed access
JCJan Clevers
Jan Clevers
Lammert KooistraLammert Kooistra
Lammert Kooistra
Plant stress is often expressed as a reduction in amount of biomass or leaf area index (LAI). In addition, stress may affect the plant pigment system, influencing the photosynthetic capacity of plants. Chlorophyll content is the main driver for this primary production. The chlorophyll content is indirectly related to the nitrogen (N) content. In this paper emphasis is on estimation of canopy chlorophyll content and N content using remote sensing techniques. Hyperspectral reflectance data representing a range of canopies were simulated using the PROSAIL radiative transfer model at a 1 nm sampling interval. Various indices were tested for estimating canopy chlorophyll content. Subsequently, tests with field data were performed for sampling locations within an extensively grazed fen meadow using ASD FieldSpec measurements and within a potato field with a Cropscan radiometer for estimating canopy N content. PROSAIL simulations showed that the red-edge chlorophyll index (CIred edge) was linearly related to the canopy chlorophyll content over the full range of potential values (R2=0.94) . In contrast, highly non-linear relationships of chlorophyll content with most traditional red-edge indices were found. At the study sites the CI2 was found to be a good and linear estimator of canopy N content (no chlorophyll was measured) for both the grassland site (R2=0.77) and for the potato field (R2=0.88) . The latter number refers to plots showing no “luxury” N consumption. However, for the full potato data set, including highly fertilized plants, an exponential relationship yielded a better fit (R2=0.85) as compared to a linear fit (R2=0.65) . Currently, this approach can, e.g., be applied with MERIS and Hyperion data and with the upcoming Sentinel-2 and -3 systems.

1 May 2015 in Remote Sensing of Environment
Verified
Journal Article
Closed access
BDBen DeVries
Ben DeVries
JVJan Verbesselt
Jan Verbesselt
Lammert KooistraLammert Kooistra
Lammert Kooistra
MHMartin Herold
Martin Herold

17 October 2017 in Sensors
Verified
Journal Article
Open access
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BBBenjamin Brede
Benjamin Brede
Alvaro LauAlvaro Lau
Alvaro Lau
HBHarm Bartholomeus
Harm Bartholomeus
Lammert KooistraLammert Kooistra
Lammert Kooistra
In recent years, LIght Detection And Ranging (LiDAR) and especially Terrestrial Laser Scanning (TLS) systems have shown the potential to revolutionise forest structural characterisation by providing unprecedented 3D data. However, manned Airborne Laser Scanning (ALS) requires costly campaigns and produces relatively low point density, while TLS is labour intense and time demanding. Unmanned Aerial Vehicle (UAV)-borne laser scanning can be the way in between. In this study, we present first results and experiences with the RIEGL RiCOPTER with VUX ® -1UAV ALS system and compare it with the well tested RIEGL VZ-400 TLS system. We scanned the same forest plots with both systems over the course of two days. We derived Digital Terrain Model (DTMs), Digital Surface Model (DSMs) and finally Canopy Height Model (CHMs) from the resulting point clouds. ALS CHMs were on average 11.5 c m higher in five plots with different canopy conditions. This showed that TLS could not always detect the top of canopy. Moreover, we extracted trunk segments of 58 trees for ALS and TLS simultaneously, of which 39 could be used to model Diameter at Breast Height (DBH). ALS DBH showed a high agreement with TLS DBH with a correlation coefficient of 0.98 and root mean square error of 4.24 c m . We conclude that RiCOPTER has the potential to perform comparable to TLS for estimating forest canopy height and DBH under the studied forest conditions. Further research should be directed to testing UAV-borne LiDAR for explicit 3D modelling of whole trees to estimate tree volume and subsequently Above-Ground Biomass (AGB).

1 September 2016 in Science of The Total Environment
Verified
Journal Article
Closed access
TCTao Chen
Tao Chen
QCQingrui Chang
Qingrui Chang
JLJing Liu
Jing Liu
JCJan Clevers
Jan Clevers
Lammert KooistraLammert Kooistra
Lammert Kooistra