Alfonso Bueno-Orovio

Prof. Dr. Alfonso Bueno-Orovio

Department of Computer Science, University of Oxford, Oxford , UK
orcid

Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 March 2020 in European Heart Journal
Verified
Journal Article
Open access
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JCJorge Corral-Acero
Jorge Corral-Acero
FMFrancesca Margara
Francesca Margara
MMMaciej Marciniak
Maciej Marciniak
CRCristobal Rodero
Cristobal Rodero
FLFilip Loncaric
Filip Loncaric
Pablo LamataPablo Lamata
Pablo Lamata
Providing therapies tailored to each patient is the vision of precision medicine, enabled by the increasing ability to capture extensive data about individual patients. In this position paper, we argue that the second enabling pillar towards this vision is the increasing power of computers and algorithms to learn, reason, and build the ‘digital twin’ of a patient. Computational models are boosting the capacity to draw diagnosis and prognosis, and future treatments will be tailored not only to current health status and data, but also to an accurate projection of the pathways to restore health by model predictions. The early steps of the digital twin in the area of cardiovascular medicine are reviewed in this article, together with a discussion of the challenges and opportunities ahead. We emphasize the synergies between mechanistic and statistical models in accelerating cardiovascular research and enabling the vision of precision medicine.

1 August 2008 in Journal of Theoretical Biology
Verified
Journal Article
Closed access
Alfonso Bueno-OrovioAlfonso Bueno-Orovio
Alfonso Bueno-Orovio
ECElizabeth M. Cherry
Elizabeth M. Cherry
FFFlavio H. Fenton
Flavio H. Fenton

1 April 2014 in BIT Numerical Mathematics
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Journal Article
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Alfonso Bueno-OrovioAlfonso Bueno-Orovio
Alfonso Bueno-Orovio
DKDavid Kay
David Kay
KBKevin Burrage
Kevin Burrage

12 September 2017 in Frontiers in Physiology
Verified
Journal Article
Open access
EPElisa Passini
Elisa Passini
OBOliver J. Britton
Oliver J. Britton
HLHua Rong Lu
Hua Rong Lu
JRJutta Rohrbacher
Jutta Rohrbacher
AHAn N. Hermans
An N. Hermans
BRBlanca Rodriguez
Blanca Rodriguez
Early prediction of cardiotoxicity is critical for drug development. Current animal models raise ethical and translational questions, and have limited accuracy in clinical risk prediction. Human-based computer models constitute a fast, cheap and potentially effective alternative to experimental assays, also facilitating translation to human. Key challenges include consideration of inter-cellular variability in drug responses and integration of computational and experimental methods in safety pharmacology. Our aim is to evaluate the ability of in silico drug trials in populations of human action potential (AP) models to predict clinical risk of drug-induced arrhythmias based on ion channel information, and to compare simulation results against experimental assays commonly used for drug testing. A control population of 1,213 human ventricular AP models in agreement with experimental recordings was constructed. In silico drug trials were performed for 62 reference compounds at multiple concentrations, using pore-block drug models (IC50/Hill coefficient). Drug-induced changes in AP biomarkers were quantified, together with occurrence of repolarisation/depolarisation abnormalities. Simulation results were used to predict clinical risk based on reports of Torsade de Pointes arrhythmias, and further evaluated in a subset of compounds through comparison with electrocardiograms from rabbit wedge preparations and Ca2+-transient recordings in human induced pluripotent stem cell-derived cardiomyocytes (hiPS-CMs). Drug-induced changes in silico vary in magnitude depending on the specific ionic profile of each model in the population, thus allowing to identify cell sub-populations at higher risk of developing abnormal AP phenotypes. Models with low repolarisation reserve (increased Ca2+/late Na+ currents and Na+/Ca2+-exchanger, reduced Na+/K+-pump) are highly vulnerable to drug-induced repolarisation abnormalities, while those with reduced inward current density (fast/late Na+ and Ca2+ currents) exhibit high susceptibility to depolarisation abnormalities. Repolarisation abnormalities in silico predict clinical risk for all compounds with 89% accuracy. Drug-induced changes in biomarkers are in overall agreement across different assays: in silico AP duration changes reflect the ones observed in rabbit QT interval and hiPS-CMs Ca2+-transient, and simulated upstroke velocity captures variations in rabbit QRS complex. Our results demonstrate that human in silico drug trials constitute a powerful methodology for prediction of clinical pro-arrhythmic cardiotoxicity, ready for integration in the existing drug safety assessment pipelines.

20 May 2013 in Proceedings of the National Academy of Sciences
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OBOliver J. Britton
Oliver J. Britton
Alfonso Bueno-OrovioAlfonso Bueno-Orovio
Alfonso Bueno-Orovio
KAKarel Van Ammel
Karel Van Ammel
HLHua Rong Lu
Hua Rong Lu
RTRob Towart
Rob Towart
BRBlanca Rodriguez
Blanca Rodriguez
Significance: Causes of intersubject variability in electrophysiological activity are unknown. We describe a methodology to unravel the ionic determinants of variability exhibited in experimental cardiac action potential recordings, based on the construction and calibration of populations of models. We show that 213 of 10,000 candidate models are consistent with the control experimental dataset. Ionic properties across the model population cover a wide range of values, and particular combinations of ionic properties determine shape, amplitude, and rate dependence of specific action potentials. Finally, we demonstrate that the calibrated model population quantitatively predicts effects caused by four concentrations of a potassium channel blocker.

6 August 2014 in Journal of The Royal Society Interface
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Journal Article
Open access
Alfonso Bueno-OrovioAlfonso Bueno-Orovio
Alfonso Bueno-Orovio
DKDavid Kay
David Kay
VGVicente Grau
Vicente Grau
BRBlanca Rodriguez
Blanca Rodriguez
KBKevin Burrage
Kevin Burrage
Impulse propagation in biological tissues is known to be modulated by structural heterogeneity. In cardiac muscle, improved understanding on how this heterogeneity influences electrical spread is key to advancing our interpretation of dispersion of repolarization. We propose fractional diffusion models as a novel mathematical description of structurally heterogeneous excitable media, as a means of representing the modulation of the total electric field by the secondary electrical sources associated with tissue inhomogeneities. Our results, analysed against in vivo human recordings and experimental data of different animal species, indicate that structural heterogeneity underlies relevant characteristics of cardiac electrical propagation at tissue level. These include conduction effects on action potential (AP) morphology, the shortening of AP duration along the activation pathway and the progressive modulation by premature beats of spatial patterns of dispersion of repolarization. The proposed approach may also have important implications in other research fields involving excitable complex media.