Uttam Khatri

Mr. Uttam Khatri

Chosun University, Gwangju, Republic of Korea
orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 February 2024 in Computers in Biology and Medicine
Verified
Journal Article
Open access
UKUttam Khatri
Uttam Khatri
Goo-Rak KwonGoo-Rak Kwon
Goo-Rak Kwon
Alzheimer's disease (AD) poses a substantial public health challenge, demanding accurate screening and diagnosis. Identifying AD in its early stages, including mild cognitive impairment (MCI) and healthy control (HC), is crucial given the global aging population. Structural magnetic resonance imaging (sMRI) is essential for understanding the brain's structural changes due to atrophy. While current deep learning networks overlook voxel long-term dependencies, vision transformers (ViT) excel at recognizing such dependencies in images, making them valuable in AD diagnosis. Our proposed method integrates convolution-attention mechanisms in transformer-based classifiers for AD brain datasets, enhancing performance without excessive computing resources. Replacing multi-head attention with lightweight multi-head self-attention (LMHSA), employing inverted residual (IRU) blocks, and introducing local feed-forward networks (LFFN) yields exceptional results. Training on AD datasets with a gradient-centralized optimizer and Adam achieves an impressive accuracy rate of 94.31% for multi-class classification, rising to 95.37% for binary classification (AD vs. HC) and 92.15% for HC vs. MCI. These outcomes surpass existing AD diagnosis approaches, showcasing the model's efficacy. Identifying key brain regions aids future clinical solutions for AD and neurodegenerative diseases. However, this study focused exclusively on the AD Neuroimaging Initiative (ADNI) cohort, emphasizing the need for a more robust, generalizable approach incorporating diverse databases beyond ADNI in future research.

20 October 2023 in Bioengineering
Verified
Journal Article
Open access
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UKUttam Khatri
Uttam Khatri
Goo-Rak KwonGoo-Rak Kwon
Goo-Rak Kwon
Alzheimer’s disease (AD) is a progressive neurodegenerative disorder that affects millions of people worldwide. Early and accurate prediction of AD progression is crucial for early intervention and personalized treatment planning. Although AD does not yet have a reliable therapy, several medications help slow down the disease’s progression. However, more study is still needed to develop reliable methods for detecting AD and its phases. In the recent past, biomarkers associated with AD have been identified using neuroimaging methods. To uncover biomarkers, deep learning techniques have quickly emerged as a crucial methodology. A functional molecular imaging technique known as fluorodeoxyglucose positron emission tomography (18F-FDG-PET) has been shown to be effective in assisting researchers in understanding the morphological and neurological alterations to the brain associated with AD. Convolutional neural networks (CNNs) have also long dominated the field of AD progression and have been the subject of substantial research, while more recent approaches like vision transformers (ViT) have not yet been fully investigated. In this paper, we present a self-supervised learning (SSL) method to automatically acquire meaningful AD characteristics using the ViT architecture by pretraining the feature extractor using the self-distillation with no labels (DINO) and extreme learning machine (ELM) as classifier models. In this work, we examined a technique for predicting mild cognitive impairment (MCI) to AD utilizing an SSL model which learns powerful representations from unlabeled 18F-FDG PET images, thus reducing the need for large-labeled datasets. In comparison to several earlier approaches, our strategy showed state-of-the-art classification performance in terms of accuracy (92.31%), specificity (90.21%), and sensitivity (95.50%). Then, to make the suggested model easier to understand, we highlighted the brain regions that significantly influence the prediction of MCI development. Our methods offer a precise and efficient strategy for predicting the transition from MCI to AD. In conclusion, this research presents a novel Explainable SSL-ViT model that can accurately predict AD progress based on 18F-FDG PET scans. SSL, attention, and ELM mechanisms are integrated into the model to make it more predictive and interpretable. Future research will enable the development of viable treatments for neurodegenerative disorders by combining brain areas contributing to projection with observed anatomical traits.

4 June 2020 in Computational Intelligence and Neuroscience
Verified
Journal Article
Open access
PDF file
UKUttam Khatri
Uttam Khatri
Goo-Rak KwonGoo-Rak Kwon
Goo-Rak Kwon
Alzheimer’s disease (AD) is the most common cause of dementia and a progressive neurodegenerative condition, characterized by a decline in cognitive function. Symptoms usually appear gradually and worsen over time, becoming severe enough to interfere with individual daily tasks. Thus, the accurate diagnosis of both AD and the prodromal stage (i.e., mild cognitive impairment (MCI)) is crucial for timely treatment. As AD is inherently dynamic, the relationship between AD indicators is unclear and varies over time. To address this issue, we first aimed at investigating differences in atrophic patterns between individuals with AD and MCI and healthy controls (HCs). Then we utilized multiple biomarkers, along with filter- and wrapper-based feature selection and an extreme learning machine- (ELM-) based approach, with 10-fold cross-validation for classification. Increasing efforts are focusing on the use of multiple biomarkers, which can be useful for the diagnosis of AD and MCI. However, optimum combinations have yet to be identified and most multimodal analyses use only volumetric measures obtained from magnetic resonance imaging (MRI). Anatomical structural MRI (sMRI) measures have also so far mostly been used separately. The full possibilities of using anatomical MRI for AD detection have thus yet to be explored. In this study, three measures (cortical thickness, surface area, and gray matter volume), obtained from sMRI through preprocessing for brain atrophy measurements; cerebrospinal fluid (CSF), for quantification of specific proteins; cognitive score, as a measure of cognitive performance; and APOE ε4 allele status were utilized. Our results show that a combination of specific biomarkers performs well, with accuracies of 97.31% for classifying AD vs. HC, 91.72% for MCI vs. HC, 87.91% for MCI vs. AD, and 83.38% for MCIs vs. MCIc, respectively, when evaluated using the proposed algorithm. Meanwhile, the areas under the curve (AUC) from the receiver operating characteristic (ROC) curves combining multiple biomarkers provided better classification performance. The proposed features combination and selection algorithm effectively classified AD and MCI, and MCIs vs. MCIc, the most challenging classification task, and therefore could increase the accuracy of AD classification in clinical practice. Furthermore, we compared the performance of the proposed method with SVM classifiers, using a cross-validation method with Alzheimer’s Disease Neuroimaging Initiative (ADNI) datasets.

3 March 2022 in Mathematics
Verified
Journal Article
Open access
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UKUttam Khatri
Uttam Khatri
Goo-Rak KwonGoo-Rak Kwon
Goo-Rak Kwon
Functional brain connectivity networks obtained from resting-state functional magnetic resonance imaging (rs-fMRI) have been extensively utilized for the diagnosis of Alzheimer’s disease (AD). However, the traditional correlation analysis technique only explores the pairwise relation, which may not be suitable for revealing sufficient and proper functional connectivity links among brain regions. Additionally, previous literature typically focuses on only lower-order dynamics, without considering higher-order dynamic networks properties, and they particularly focus on single frequency range time series of rs-fMRI. To solve these problems, in this article, a new diagnosis scheme is proposed by constructing a high-order dynamic functional network at different frequency level time series (full-band (0.01–0.08 Hz); slow-4 (0.027–0.08 Hz); and slow-5 (0.01–0.027 Hz)) data obtained from rs-fMRI to build the functional brain network for all brain regions. Especially, to tune the precise analysis of the regularized parameters in the Support Vector Machine (SVM), a nested leave-one-out cross-validation (LOOCV) technique is adopted. Finally, the SVM classifier is trained to classify AD from HC based on these higher-order dynamic functional brain networks at different frequency ranges. The experiment results illustrate that for all bands with a LOOCV classification accuracy of 94.10% with a 90.95% of sensitivity, and a 96.75% of specificity outperforms the individual networks. Utilization of the given technique for the identification of AD from HC compete for the most state-of-the-art technology in terms of the diagnosis accuracy. Additionally, results obtained for the all-band shows performance further suggest that our proposed scheme has a high-rate accuracy. These results have validated the effectiveness of the proposed methods for clinical value to the identification of AD.

6 January 2024
Verified
Conference Paper
Closed access
UKUttam Khatri
Uttam Khatri
Seokjoo ShinSeokjoo Shin
Seokjoo Shin
Goo-Rak KwonGoo-Rak Kwon
Goo-Rak Kwon
Alzheimer’s disease (AD) poses a significant challenge to global health, affecting over 50 million individuals worldwide with no current cure. Early identification and treatment are vital to mitigate its impact on memory, language, and actions. Recent strides in artificial intelligence (AI) and neural networks, particularly Vision Transformers (ViT), show promise in enhancing early AD diagnosis through advanced medical image analysis. ViT, surpassing conventional Convolutional Neural Networks (CNNs), proves adept at discerning subtle changes in brain structure and function, crucial for early AD detection. However, ViT models face challenges like iterative attention biases hindering effective target class focus. Our proposed solution incorporates an augmenting method and convolution patch embedding, addressing these limitations, and improving patch extraction efficiency while preserving original dimensions. Utilizing the Alzheimer’s Disease Neuroimaging Initiative (ADNI) dataset, our comprehensive study focuses on stable and convertible mild cognitive impairment (MCIs and MCIc) to AD progression. The proposed method achieves a diagnostic accuracy of 91.35%, sensitivity of 91.09%, and specificity of 91.63%, surpassing existing methodologies. This highlights the practical viability and effectiveness of our approach in AD diagnosis. In conclusion, early and accurate AD detection is crucial for patient outcomes. Our innovative methods showcase the potential of ViT in brain image analysis, paving the way for future advancements in medical imaging research.

18 July 2024 in IEEE Access
Verified
Journal Article
Open access
UKUttam Khatri
Uttam Khatri
JKJun-Hyung Kim
Jun-Hyung Kim
Goo-Rak KwonGoo-Rak Kwon
Goo-Rak Kwon
Deep neural networks have shown promising results in the analysis of structural magnetic resonance imaging (sMRI) data for the diagnosis of dementia, particularly Alzheimer’s disease (AD). Different regions of the brain have diverse structures that are linked to specific functions, which could account for the variability in disease-related changes observed in sMRI scans of these areas. Understanding the overall characteristics of sMRI data is important since current popular convolutional neural networks (CNN) for deep learning do not consider the interconnection of voxels. Vision transformers have shown effectiveness in identifying long-distance connections in the brain, which has led to their success in applications such as disease detection. However, the image noise and limited scalability of self-attention mechanisms in relation to image size has hindered their widespread use in advanced Alzheimer’s analysis. To enhance information retention and reduce network complexity, this study presents a novel adaptable efficient receptive field feature extraction network. Moreover, an advanced attention mechanism with both local grid attention block and dilated global attention module has been incorporated to highlight the characteristics of AD. Next, a more improved hierarchical inverted residual feed forward network in place of multi-layer perceptron is suggested to enhance the characterization of features through the integration of information from both lower and higher layers. Finally, the global average pooling and $1\times 1$ convolution are used to reduce dimensionality, enhance non-linearity, and allow channel interactions in feature maps before being input into the classification head. The network achieved high performance in various scenarios, with average accuracies of 97.29% for AD vs. HC and 94.79% for MCI vs. HC classification using ADNI as experimental datasets.