Keishi Shintomi

Dr. Keishi Shintomi

RIKEN, Wako, Japan
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Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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20 August 2009 in Genes & Development
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KSKeishi Shintomi
Keishi Shintomi
THTatsuya Hirano
Tatsuya Hirano
The cohesin complex establishes sister chromatid cohesion during S phase. In metazoan cells, most if not all cohesin dissociates from chromatin during mitotic prophase, leading to the formation of metaphase chromosomes with two cytologically discernible chromatids. This process, known as sister chromatid resolution, is believed to be a prerequisite for synchronous separation of sister chromatids in subsequent anaphase. To dissect this process at a mechanistic level, we set up an in vitro system. Sister chromatid resolution is severely impaired upon depletion of Wapl from Xenopus egg extracts. Exogenously added human Wapl can rescue these defects and, remarkably, it can do so in a very short time window of early mitosis. A similar set of observations is made for Pds5, a factor implicated previously in the stabilization of interphase cohesion. Characteristic amino acid motifs (the FGF motifs) in Wapl coordinate its physical and functional interactions with Pds5 and cohesin subunits. We propose that Wapl and Pds5 directly modulate conformational changes of cohesin to make it competent for dissociation from chromatin during prophase. Evidence is also presented that Sgo1 plays a hitherto underappreciated role in stabilizing cohesin along chromosome arms, which is antagonized by the mitotic kinases polo-like kinsase (Plk1) and aurora B.

15 June 2015 in Nature Cell Biology
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KSKeishi Shintomi
Keishi Shintomi
TTTatsuro Takahashi
Tatsuro Takahashi
THTatsuya Hirano
Tatsuya Hirano

29 June 2011 in Genes & Development
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KSKeishi Shintomi
Keishi Shintomi
THTatsuya Hirano
Tatsuya Hirano
To understand how chromosome shapes are determined by actions of condensins and cohesin, we devised a series of protocols in which their levels are precisely changed in Xenopus egg extracts. When the relative ratio of condensin I to II is forced to be smaller, embryonic chromosomes become shorter and thicker, being reminiscent of somatic chromosomes. Further depletion of condensin II unveils its contribution to axial shortening of chromosomes. Cohesin helps juxtapose sister chromatid arms by collaborating with condensin I and counteracting condensin II. Thus, chromosome shaping is achieved by an exquisite balance among condensin I and II and cohesin.

23 June 2017 in Science
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KSKeishi Shintomi
Keishi Shintomi
FIFukashi Inoue
Fukashi Inoue
HWHiroshi Watanabe
Hiroshi Watanabe
KOKeita Ohsumi
Keita Ohsumi
MOMiho Ohsugi
Miho Ohsugi
THTatsuya Hirano
Tatsuya Hirano
Packaging without nucleosomes: The fundamental compaction of DNA in chromosomes is thought to start with the wrapping of DNA around nucleosomes, but is nucleosome wrapping required for the condensation of mitotic chromosomes? Shintomi et al. combined Xenopus egg extracts and mouse sperm nuclei and found that chromosome-like structures could be assembled in the near-complete absence of nucleosomes (see the Perspective by Kakui and Uhlmann). These “nucleosome-depleted” chromosomes were composed of condensin-enriched discrete axes and poorly organized chromatin loops. This finding challenges the textbook view of mitotic chromosome organization. Science , this issue p. 1284 ; see also p. 1233

31 May 2005 in Proceedings of the National Academy of Sciences
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KSKeishi Shintomi
Keishi Shintomi
MIMari Iwabuchi
Mari Iwabuchi
HSHideaki Saeki
Hideaki Saeki
KUKiyoe Ura
Kiyoe Ura
TKTakeo Kishimoto
Takeo Kishimoto
KOKeita Ohsumi
Keita Ohsumi
In eukaryotic cells, genomic DNA is primarily packaged into nucleosomes through sequential ordered binding of the core and linker histone proteins. The acidic proteins termed histone chaperones are known to bind to core histones to neutralize their positive charges, thereby facilitating their proper deposition onto DNA to assemble the core of nucleosomes. For linker histones, however, little has been known about the regulatory mechanism for deposition of linker histones onto the linker DNA. Here we report that, in Xenopus eggs, the linker histone is associated with the Xenopus homologue of nucleosome assembly protein-1 (NAP-1), which is known to be a chaperone for the core histones H2A and H2B in Drosophila and mammalian cells [Ito, T., Bulger, M., Kobayashi, R. & Kadonaga, J. T. (1996) Mol. Cell Biol. 16, 3112–3124; Chang, L., Loranger, S. S., Mizzen, C., Ernst, S. G., Allis, C. D. & Annunziato, A. T. (1997) Biochemistry 36, 469–480]. We show that NAP-1 acts as the chaperone for the linker histone in both sperm chromatin remodeling into nucleosomes and linker histone binding to nucleosome core dimers. In the presence of NAP-1, the linker histone is properly deposited onto linker DNA at physiological ionic strength, without formation of nonspecific aggregates. These results strongly suggest that NAP-1 functions as a chaperone for the linker histone in Xenopus eggs.

12 September 2011 in Journal of Cell Biology
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DYDaisuke Yamashita
Daisuke Yamashita
KSKeishi Shintomi
Keishi Shintomi
TOTakao Ono
Takao Ono
IGIoannis Gavvovidis
Ioannis Gavvovidis
DSDetlev Schindler
Detlev Schindler
THTatsuya Hirano
Tatsuya Hirano
Mutations in human MCPH1 (hMCPH1) cause primary microcephaly, which is characterized by a marked reduction of brain size. Interestingly, hMCPH1 mutant patient cells display unique cellular phenotypes, including premature chromosome condensation (PCC), in G2 phase. To test whether hMCPH1 might directly participate in the regulation of chromosome condensation and, if so, how, we developed a cell-free assay using Xenopus laevis egg extracts. Our results demonstrate that an N-terminal domain of hMCPH1 specifically inhibits the action of condensin II by competing for its chromosomal binding sites in vitro. This simple and powerful assay allows us to dissect mutations causing primary microcephaly in vivo and evolutionary substitutions among different species. A complementation assay using patient cells revealed that, whereas the N-terminal domain of hMCPH1 is sufficient to rescue the PCC phenotype, its central domain plays an auxiliary role in shaping metaphase chromosomes by physically interacting with condensin II. Thus, hMCPH1 acts as a composite modulator of condensin II to regulate chromosome condensation and shaping.