Dibyendu Dana

Dr. Dibyendu Dana

Chemistry and Biochemistry Department, Queens College of The City University of New York, 65-30 Kissena Blvd, Flushing, NY 11367, USA
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Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 February 2020 in Molecules
Verified
Journal Article
Open access
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Dibyendu DanaDibyendu Dana
Dibyendu Dana
Sanjai KumarSanjai Kumar
Sanjai Kumar
Human cathepsin L belongs to the cathepsin family of proteolytic enzymes with primarily an endopeptidase activity. Although its primary functions were originally thought to be only of a housekeeping enzyme that degraded intracellular and endocytosed proteins in lysosome, numerous recent studies suggest that it plays many critical and specific roles in diverse cellular settings. Not surprisingly, the dysregulated function of cathepsin L has manifested itself in several human diseases, making it an attractive target for drug development. Unfortunately, several redundant and isoform-specific functions have recently emerged, adding complexities to the drug discovery process. To address this, a series of chemical biology tools have been developed that helped define cathepsin L biology with exquisite precision in specific cellular contexts. This review elaborates on the recently developed small molecule inhibitors and probes of human cathepsin L, outlining their mechanisms of action, and describing their potential utilities in dissecting unknown function.

9 September 2013 in Oncogenesis
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Journal Article
Open access
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TDT K Das
T K Das
Dibyendu DanaDibyendu Dana
Dibyendu Dana
SPS S Paroly
S S Paroly
SPS K Perumal
S K Perumal
SSS Singh
S Singh
Sanjai KumarSanjai Kumar
Sanjai Kumar
Centrosomal kinase Nek2 is overexpressed in different cancers, yet how it contributes toward tumorigenesis remains poorly understood. dNek2 overexpression in a Drosophila melanogaster model led to upregulation of Drosophila Wnt ortholog wingless (Wg), and alteration of cell migration markers—Rho1, Rac1 and E-cadherin (Ecad)—resulting in changes in cell shape and tissue morphogenesis. dNek2 overexpression cooperated with receptor tyrosine kinase and mitogen-activated protein kinase signaling to upregulate activated Akt, Diap1, Mmp1 and Wg protein to promote local invasion, distant seeding and metastasis. In tumor cell injection assays, dNek2 cooperated with Ras and Src signaling to promote aggressive colonization of tumors into different adult fly tissues. Inhibition of the PI3K pathway suppressed the cooperation of dNek2 with other growth pathways. Consistent with our fly studies, overexpression of human Nek2 in A549 lung adenocarcinoma and HEK293T cells led to activation of the Akt pathway and increase in β-catenin protein levels. Our computational approach identified a class of Nek2-inhibitory compounds and a novel drug-like pharmacophore that reversed the Nek2 overexpression phenotypes in flies and human cells. Our finding posits a novel role for Nek2 in promoting metastasis in addition to its currently defined role in promoting chromosomal instability. It provides a rationale for the selective advantage of centrosome amplification in cancer.

1 June 2013 in Bioorganic & Medicinal Chemistry
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Journal Article
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BPBhargav A. Patel
Bhargav A. Patel
RKRamalingam Krishnan
Ramalingam Krishnan
NKNikhil Khadtare
Nikhil Khadtare
KGK.R. Gurukumar
K.R. Gurukumar
ABAmartya Basu
Amartya Basu
TTTanaji T. Talele
Tanaji T. Talele

6 January 2022 in Molecules
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Journal Article
Open access
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Dibyendu DanaDibyendu Dana
Dibyendu Dana
TDTuhin Das
Tuhin Das
ACAthena Choi
Athena Choi
ABAshif I. Bhuiyan
Ashif I. Bhuiyan
TDTirtha K. Das
Tirtha K. Das
Sanjai KumarSanjai Kumar
Sanjai Kumar
Cell cycle kinases represent an important component of the cell machinery that controls signal transduction involved in cell proliferation, growth, and differentiation. Nek2 is a mitotic Ser/Thr kinase that localizes predominantly to centrosomes and kinetochores and orchestrates centrosome disjunction and faithful chromosomal segregation. Its activity is tightly regulated during the cell cycle with the help of other kinases and phosphatases and via proteasomal degradation. Increased levels of Nek2 kinase can promote centrosome amplification (CA), mitotic defects, chromosome instability (CIN), tumor growth, and cancer metastasis. While it remains a highly attractive target for the development of anti-cancer therapeutics, several new roles of the Nek2 enzyme have recently emerged: these include drug resistance, bone, ciliopathies, immune and kidney diseases, and parasitic diseases such as malaria. Therefore, Nek2 is at the interface of multiple cellular processes and can influence numerous cellular signaling networks. Herein, we provide a critical overview of Nek2 kinase biology and discuss the signaling roles it plays in both normal and diseased human physiology. While the majority of research efforts over the last two decades have focused on the roles of Nek2 kinase in tumor development and cancer metastasis, the signaling mechanisms involving the key players associated with several other notable human diseases are highlighted here. We summarize the efforts made so far to develop Nek2 inhibitory small molecules, illustrate their action modalities, and provide our opinion on the future of Nek2-targeted therapeutics. It is anticipated that the functional inhibition of Nek2 kinase will be a key strategy going forward in drug development, with applications across multiple human diseases.

1 June 2013 in Bioorganic & Medicinal Chemistry
Verified
Journal Article
Closed access
Dibyendu DanaDibyendu Dana
Dibyendu Dana
ADAnibal R. Davalos
Anibal R. Davalos
SDShatarupa De
Shatarupa De
PRPratikkumar Rathod
Pratikkumar Rathod
RGRanjith K. Gamage
Ranjith K. Gamage
Sanjai KumarSanjai Kumar
Sanjai Kumar

2 May 2013 in Tetrahedron Letters
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Journal Article
Closed access
Dibyendu DanaDibyendu Dana
Dibyendu Dana
ADAnibal R. Davalos
Anibal R. Davalos
GSGopal Subramaniam
Gopal Subramaniam
NANisar Afzal
Nisar Afzal
WHWilliam H. Hersh
William H. Hersh
Sanjai KumarSanjai Kumar
Sanjai Kumar