Jorge Gonçalves

Prof. Jorge Gonçalves

LCSB, University of Luxembourg, Luxembourg, Luxembourg
+1
orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 May 2020 in Nature Machine Intelligence
Verified
Journal Article
Open access
PDF file
LYLi Yan
Li Yan
HZHai-Tao Zhang
Hai-Tao Zhang
Jorge GonçalvesJorge Gonçalves
Jorge Gonçalves
YXYang Xiao
Yang Xiao
MWMaolin Wang
Maolin Wang
YYYe Yuan
Ye Yuan
The sudden increase in COVID-19 cases is putting high pressure on healthcare services worldwide. At this stage, fast, accurate and early clinical assessment of the disease severity is vital. To support decision making and logistical planning in healthcare systems, this study leverages a database of blood samples from 485 infected patients in the region of Wuhan, China, to identify crucial predictive biomarkers of disease mortality. For this purpose, machine learning tools selected three biomarkers that predict the mortality of individual patients more than 10 days in advance with more than 90% accuracy: lactic dehydrogenase (LDH), lymphocyte and high-sensitivity C-reactive protein (hs-CRP). In particular, relatively high levels of LDH alone seem to play a crucial role in distinguishing the vast majority of cases that require immediate medical attention. This finding is consistent with current medical knowledge that high LDH levels are associated with tissue breakdown occurring in various diseases, including pulmonary disorders such as pneumonia. Overall, this Article suggests a simple and operable decision rule to quickly predict patients at the highest risk, allowing them to be prioritized and potentially reducing the mortality rate.

1 January 2018 in NeuroImage: Clinical
Verified
Journal Article
Open access
AHAndreas Husch
Andreas Husch
MPMikkel V. Petersen
Mikkel V. Petersen
PGPeter Gemmar
Peter Gemmar
Jorge GonçalvesJorge Gonçalves
Jorge Gonçalves
FHFrank Hertel
Frank Hertel
Deep brain stimulation (DBS) is a neurosurgical intervention where electrodes are permanently implanted into the brain in order to modulate pathologic neural activity. The post-operative reconstruction of the DBS electrodes is important for an efficient stimulation parameter tuning. A major limitation of existing approaches for electrode reconstruction from post-operative imaging that prevents the clinical routine use is that they are manual or semi-automatic, and thus both time-consuming and subjective. Moreover, the existing methods rely on a simplified model of a straight line electrode trajectory, rather than the more realistic curved trajectory. The main contribution of this paper is that for the first time we present a highly accurate and fully automated method for electrode reconstruction that considers curved trajectories. The robustness of our proposed method is demonstrated using a multi-center clinical dataset consisting of N = 44 electrodes. In all cases the electrode trajectories were successfully identified and reconstructed. In addition, the accuracy is demonstrated quantitatively using a high-accuracy phantom with known ground truth. In the phantom experiment, the method could detect individual electrode contacts with high accuracy and the trajectory reconstruction reached an error level below 100 μm (0.046 ± 0.025 mm). An implementation of the method is made publicly available such that it can directly be used by researchers or clinicians. This constitutes an important step towards future integration of lead reconstruction into standard clinical care.

25 October 2019 in Nature Communications
Verified
Journal Article
Open access
PDF file
YYYe Yuan
Ye Yuan
XTXiuchuan Tang
Xiuchuan Tang
WZWei Zhou
Wei Zhou
WPWei Pan
Wei Pan
XLXiuting Li
Xiuting Li
Jorge GonçalvesJorge Gonçalves
Jorge Gonçalves
Cyber-physical systems embed software into the physical world. They appear in a wide range of applications such as smart grids, robotics, and intelligent manufacturing. Cyber-physical systems have proved resistant to modeling due to their intrinsic complexity arising from the combination of physical and cyber components and the interaction between them. This study proposes a general framework for discovering cyber-physical systems directly from data. The framework involves the identification of physical systems as well as the inference of transition logics. It has been applied successfully to a number of real-world examples. The novel framework seeks to understand the underlying mechanism of cyber-physical systems as well as make predictions concerning their state trajectories based on the discovered models. Such information has been proven essential for the assessment of the performance of cyber-physical systems; it can potentially help debug in the implementation procedure and guide the redesign to achieve the required performance.

13 September 2019 in IEEE Transactions on Automatic Control
Verified
Journal Article
Closed access
AMAlexandre Mauroy
Alexandre Mauroy
Jorge GonçalvesJorge Gonçalves
Jorge Gonçalves
We develop a novel lifting technique for nonlinear system identification based on the framework of the Koopman operator. The key idea is to identify the linear (infinite-dimensional) Koopman operator in the lifted space of observables, instead of identifying the nonlinear system in the state space, a process which results in a linear method for nonlinear systems identification. The proposed lifting technique is an indirect method that does not require to compute time derivatives and is therefore well-suited to low-sampling rate datasets. Considering different finite-dimensional subspaces to approximate and identify the Koopman operator, we propose two numerical schemes: a main method and a dual method. The main method is a parametric identification technique that can accurately reconstruct the vector field of a broad class of systems. The dual method provides estimates of the vector field at the data points and is well-suited to identify high-dimensional systems with small datasets. The present paper describes the two methods, provides theoretical convergence results, and illustrates the lifting techniques with several examples.

15 September 2017 in IEEE Transactions on Automatic Control
Verified
Journal Article
Open access
Johan MarkdahlJohan Markdahl
Johan Markdahl
JTJohan Thunberg
Johan Thunberg
Jorge GonçalvesJorge Gonçalves
Jorge Gonçalves
This paper establishes novel results regarding the global convergence properties of a large class of consensus protocols for multi-agent systems that evolve on the $n$-dimensional unit sphere or $n$-sphere. For any connected, undirected graph and all $n\epsilon\mathbb{IN}\{{1\}}$, each protocol in said class is shown to yield almost global consensus. The feedback laws are intrinsic gradients of a Lyapunov function and include the canonical gradient descent protocol as a special case. This convergence result sheds new light on the general problem of consensus on Riemannian manifolds; the case of the n-sphere for $n\epsilon\mathbb{IN}\{{1\}}$ differs from those of the circle and SO(3) where the corresponding protocols fail to achieve almost global consensus. Finally, we derive a novel consensus protocol on SO(3) by combining two almost globally convergent protocols on the $n$sphere for $n\epsilon\mathbb{IN}\{{1,2\}}$. Theoretical and simulation results suggest that the combined protocol yields almost global consensus on SO(3).

1 August 2015 in Current Opinion in Biotechnology
Verified
Journal Article
Open access
CTChristophe Trefois
Christophe Trefois
PAPaul Antony
Paul Antony
Jorge GonçalvesJorge Gonçalves
Jorge Gonçalves
ASAlexander Skupin
Alexander Skupin
RBRudi Balling
Rudi Balling
Ecosystems and biological systems are known to be inherently complex and to exhibit nonlinear dynamics. Diseases such as microbiome dysregulation or depression can be seen as complex systems as well and were shown to exhibit patterns of nonlinearity in their response to perturbations. These nonlinearities can be revealed by a sudden shift in system states, for instance from health to disease. The identification and characterization of early warning signals which could predict upcoming critical transitions is of primordial interest as prevention of disease onset is a major aim in health care. In this review, we focus on recent evidence for critical transitions in diseases and discuss the potential of such studies for therapeutic applications.