Norio Shibata

Dr. Norio Shibata

Nagoya Institute of Technology
orcid

Research Focus & Metrics

Academic Career Length

38Years (1989-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 April 2020 in ACS Omega
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Journal Article
Open access
MIMunenori Inoue
Munenori Inoue
YSYuji Sumii
Yuji Sumii
Norio ShibataNorio Shibata
Norio Shibata
Inspired by the success of fluorinated corticosteroids in the 1950s and fluoroquinolones in the 1980s, fluorine-containing pharmaceuticals, which are also known as fluoro-pharmaceuticals, have been attracting attention for more than half of a century. Presently, about 20% of the commercial pharmaceuticals are fluoro-pharmaceuticals. In this mini-review, we analyze the prevalence of fluoro-pharmaceuticals in the market and categorize them into several groups based on the chemotype of the fluoro-functional groups, their therapeutic purpose, and the presence of heterocycles and/or chirality to highlight the structural motifs, patterns, and promising trends in fluorine-based drug design. Our database contains 340 fluoro-pharmaceuticals, from the first fluoro-pharmaceutical, Florinef, to the latest fluoro-pharmaceuticals registered in 2019 and drugs that have been withdrawn. The names and chemical structures of all the 340 fluorinated drugs discussed are provided in the Supporting Information.

1 September 2020 in iScience
Verified
Journal Article
Open access
YOYuta Ogawa
Yuta Ogawa
ETEtsuko Tokunaga
Etsuko Tokunaga
OKOsamu Kobayashi
Osamu Kobayashi
KHKenji Hirai
Kenji Hirai
Norio ShibataNorio Shibata
Norio Shibata
Currently, more than 1,200 agrochemicals are listed and many of these are regularly used by farmers to generate the food supply to support the expanding global population. However, resistance to pesticides is an ever more frequently occurring phenomenon, and thus, a continuous supply of novel agrochemicals with high efficiency, selectivity, and low toxicity is required. Moreover, the demand for a more sustainable society, by reducing the risk chemicals pose to human health and by minimizing their environmental footprint, renders the development of novel agrochemicals an ever more challenging undertaking. In the last two decades, fluoro-chemicals have been associated with significant advances in the agrochemical development process. We herein analyze the contribution that organofluorine compounds make to the agrochemical industry. Our database covers 424 fluoro-agrochemicals and is subdivided into several categories including chemotypes, mode of action, heterocycles, and chirality. This in-depth analysis reveals the unique relationship between fluorine and agrochemicals.

14 August 2014 in Chemical Reviews
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Journal Article
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XXXiu-Hua Xu
Xiu-Hua Xu
KMKohei Matsuzaki
Kohei Matsuzaki
Norio ShibataNorio Shibata
Norio Shibata

2 April 2018 in Chemical Reviews
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Journal Article
Closed access
YZYi Zhu
Yi Zhu
JHJianlin Han
Jianlin Han
JWJiandong Wang
Jiandong Wang
Norio ShibataNorio Shibata
Norio Shibata
MSMikiko Sodeoka
Mikiko Sodeoka
FTF. Dean Toste
F. Dean Toste

19 June 1997 in Nature
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Journal Article
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PRPeter L. Roach
Peter L. Roach
ICIan J. Clifton
Ian J. Clifton
CHCharles M. H. Hensgens
Charles M. H. Hensgens
Norio ShibataNorio Shibata
Norio Shibata
CSChristopher J. Schofield
Christopher J. Schofield
JBJack E. Baldwin
Jack E. Baldwin
The biosynthesis of penicillin and cephalosporin antibiotics in microorganisms requires the formation of the bicyclic nucleus of penicillin1. Isopenicillin N synthase (IPNS), a non-haem iron-dependent oxidase, catalyses the reaction of a tripeptide, δ-(L-α-aminoadipoyl)- L-cysteinyl-D-valine (ACV), and dioxygen to form isopenicillin N and two water molecules2. Mechanistic studies suggest the reaction is initiated by ligation of the substrate thiolate to the iron centre, and proceeds through an enzyme-bound monocyclic intermediate3,4 (Fig. 1). Here we report the crystal structure of IPNS complexed to ferrous iron and ACV, determined to 1.3 å resolution. Based on the structure, we propose a mechanism for penicillin formation that involves ligation of ACV to the iron centre, creating a vacant iron coordination site into which dioxygen can bind. Subsequently, iron-dioxygen and iron-oxo species remove the requisite hydrogens from ACV without the direct assistance of protein residues (Fig. 2). The crystal structure of the complex with the dioxygen analogue, NO and ACV bound to the active-site iron supports this hypothesis.

9 May 2008 in Angewandte Chemie International Edition
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Journal Article
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TITakehisa Ishimaru
Takehisa Ishimaru
Norio ShibataNorio Shibata
Norio Shibata
THTakao Horikawa
Takao Horikawa
NYNaomi Yasuda
Naomi Yasuda
SNShuichi Nakamura
Shuichi Nakamura
MSMotoo Shiro
Motoo Shiro