Daan Frenkel

Daan Frenkel

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Daan Frenkel


Research Focus & Metrics

Academic Career Length

55Years (1972-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 July 1997 in Physics Today
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DFDaan Frenkel
Daan Frenkel
BSBerend Smit
Berend Smit
MRMark A. Ratner
Mark A. Ratner

26 September 1997 in Science
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PWPieter Rein Ten Wolde
Pieter Rein Ten Wolde
DFDaan Frenkel
Daan Frenkel
Numerical simulations of homogeneous crystal nucleation with a model for globular proteins with short-range attractive interactions showed that the presence of a metastable fluid-fluid critical point drastically changes the pathway for the formation of a crystal nucleus. Close to this critical point, the free-energy barrier for crystal nucleation is strongly reduced and hence, the crystal nucleation rate increases by many orders of magnitude. Because the location of the metastable critical point can be controlled by changing the composition of the solvent, the present work suggests a systematic approach to promote protein crystallization.

1 October 1984 in The Journal of Chemical Physics
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DFDaan Frenkel
Daan Frenkel
ALAnthony J. C. Ladd
Anthony J. C. Ladd
We present a new method to compute the absolute free energy of arbitrary solid phases by Monte Carlo simulation. The method is based on the construction of a reversible path from the solid phase under consideration to an Einstein crystal with the same crystallographic structure. As an application of the method we have recomputed the free energy of the fcc hard‐sphere solid at melting. Our results agree well with the single occupancy cell results of Hoover and Ree. The major source of error is the nature of the extrapolation procedure to the thermodynamic limit. We have also computed the free energy difference between hcp and fcc hard‐sphere solids at densities close to melting. We find that this free energy difference is not significantly different from zero: −0.001<ΔF<0.002.

1 January 1992 in Molecular Physics
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JSJörn Ilja Siepmann
Jörn Ilja Siepmann
DFDaan Frenkel
Daan Frenkel
We propose a novel approach that allows efficient numerical simulation of systems consisting of flexible chain molecules. The method is especially suitable for the numerical simulation of dense chain systems and monolayers. A new type of Monte Carlo move is introduced that makes it possible to carry out large scale conformational changes of the chain molecule in a single trial move. Our scheme is based on the selfavoiding random walk algorithm of Rosenbluth and Rosenbluth. As an illustration, we compare the results of a calculation of mean-square end to end lengths for single chains on a two-dimensional square lattice with corresponding data gained from other simulations.

1 February 2001 in Nature
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SAStefan Auer
Stefan Auer
DFDaan Frenkel
Daan Frenkel

22 June 1996 in The Journal of Chemical Physics
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PWPieter Rein Ten Wolde
Pieter Rein Ten Wolde
MRMaria J. Ruiz-Montero
Maria J. Ruiz-Montero
DFDaan Frenkel
Daan Frenkel
We report a computer-simulation study of the rate of homogeneous crystal nucleation and the structure of crystal nuclei in a Lennard-Jones system at moderate undercooling. The height of the nucleation barrier has been determined using umbrella sampling, whereas the barrier crossing rate is calculated using molecular dynamics simulation. The simulations clearly show that the barrier crossing is a diffusive process. Nevertheless, the kinetic prefactor in the nucleation rate is found to be some two orders of magnitude larger than predicted by classical nucleation theory. The height of the barrier is in good agreement with the theoretical prediction. Although the Lennard-Jones system has a stable face-centered cubic (fcc) phase below the melting line, the precritical nuclei are found to be mainly body-centered cubic (bcc) ordered. As they grow to their critical size, they become more fcc ordered in the core. However, the critical and postcritical nuclei retain a high degree of bcc ordering in the interface. Furthermore it is found that in the interface the density falls off faster than the structural order parameter, which is in agreement with the predictions of density functional calculations. [P. Harrowell and D. W. Oxtoby, J. Chem. Phys. 80, 1639 (1984)].