Anatoly V. Zherdev

Dr. Anatoly V. Zherdev

Bach Institute of Biochemistry, Russian Academy of Sciences, Moscow, Russia
orcid

Research Focus & Metrics

Academic Career Length

35Years (1992-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 March 2014 in TrAC Trends in Analytical Chemistry
Verified
Journal Article
Closed access
Boris B. DzantievBoris B. Dzantiev
Boris B. Dzantiev
NBNadezhda A. Byzova
Nadezhda A. Byzova
AUAlexander Urusov
Alexander Urusov
Anatoly V. ZherdevAnatoly V. Zherdev
Anatoly V. Zherdev

1 January 2015 in Biosensors and Bioelectronics
Verified
Journal Article
Closed access
NTN.A. Taranova
N.A. Taranova
Anna N. BerlinaAnna N. Berlina
Anna N. Berlina
Anatoly V. ZherdevAnatoly V. Zherdev
Anatoly V. Zherdev
Boris B. DzantievBoris B. Dzantiev
Boris B. Dzantiev

17 July 2019 in Biosensors
Verified
Journal Article
Open access
PDF file
AUAlexander Urusov
Alexander Urusov
Anatoly V. ZherdevAnatoly V. Zherdev
Anatoly V. Zherdev
Boris B. DzantievBoris B. Dzantiev
Boris B. Dzantiev
Point-of-care (POC) or bedside analysis is a global trend in modern diagnostics. Progress in POC testing has largely been provided by advanced manufacturing technology for lateral flow (immunochromatographic) test strips. They are widely used to rapidly and easily control a variety of biomarkers of infectious diseases and metabolic and functional disorders, as well as in consumer protection and environmental monitoring. However, traditional lateral flow tests rely on visual assessment and qualitative conclusion, which limit the objectivity and information output of the assays. Therefore, there is a need for approaches that retain the advantages of lateral flow assays and provide reliable quantitative information about the content of a target compound in a sample mixture. This review describes the main options for detecting, processing, and interpreting immunochromatographic analysis results. The possibilities of modern portable detectors that register colored, fluorescent, magnetic, and conductive labels are discussed. Prospects for further development in this direction are also examined.

14 March 2013 in Analytical and Bioanalytical Chemistry
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Journal Article
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Anna N. BerlinaAnna N. Berlina
Anna N. Berlina
NTNadezhda A. Taranova
Nadezhda A. Taranova
Anatoly V. ZherdevAnatoly V. Zherdev
Anatoly V. Zherdev
YVYuri Y. Vengerov
Yuri Y. Vengerov
Boris B. DzantievBoris B. Dzantiev
Boris B. Dzantiev

Verified
Journal Article
Open access
PDF file
ABAndrey A. Buglak
Andrey A. Buglak
ASAlexey Samokhvalov
Alexey Samokhvalov
Anatoly V. ZherdevAnatoly V. Zherdev
Anatoly V. Zherdev
Boris B. DzantievBoris B. Dzantiev
Boris B. Dzantiev
Aptamers are nucleic acid analogues of antibodies with high affinity to different targets, such as cells, viruses, proteins, inorganic materials, and coenzymes. Empirical approaches allow the design of in vitro aptamers that bind particularly to a target molecule with high affinity and selectivity. Theoretical methods allow significant expansion of the possibilities of aptamer design. In this study, we review theoretical and joint theoretical-experimental studies dedicated to aptamer design and modeling. We consider aptamers with different targets, such as proteins, antibiotics, organophosphates, nucleobases, amino acids, and drugs. During nucleic acid modeling and in silico design, a full set of in silico methods can be applied, such as docking, molecular dynamics (MD), and statistical analysis. The typical modeling workflow starts with structure prediction. Then, docking of target and aptamer is performed. Next, MD simulations are performed, which allows for an evaluation of the stability of aptamer/ligand complexes and determination of the binding energies with higher accuracy. Then, aptamer/ligand interactions are analyzed, and mutations of studied aptamers made. Subsequently, the whole procedure of molecular modeling can be reiterated. Thus, the interactions between aptamers and their ligands are complex and difficult to understand using only experimental approaches. Docking and MD are irreplaceable when aptamers are studied in silico.

20 October 2017 in Bioconjugate Chemistry
Verified
Journal Article
Closed access
NBNadezhda A. Byzova
Nadezhda A. Byzova
ISIrina V. Safenkova
Irina V. Safenkova
ESElvira S. Slutskaya
Elvira S. Slutskaya
Anatoly V. ZherdevAnatoly V. Zherdev
Anatoly V. Zherdev
Boris B. DzantievBoris B. Dzantiev
Boris B. Dzantiev