Simone Ferrari

Prof. Simone Ferrari

Politecnico di Milano, Milan, Lombardy, Italy
orcid

Research Focus & Metrics

Academic Career Length

32Years (1995-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2013 in Frontiers in Plant Science
Verified
Journal Article
Open access
SFSimone Ferrari
Simone Ferrari
Oligogalacturonides (OGs) are oligomers of alpha-1,4-linked galacturonosyl residues released from plant cell walls upon partial degradation of homogalacturonan. OGs are able to elicit defense responses, including accumulation of reactive oxygen species and pathogenesis-related proteins, and protect plants against pathogen infections. Recent studies demonstrated that OGs are perceived by wall-associated kinases and share signaling components with microbe-associated molecular patterns. For this reason OGs are now considered true damage-associated molecular patterns that activate the plant innate immunity and may also be involved in the activation of responses to mechanical wounding. Furthermore, OGs appear to modulate developmental processes, likely through their ability to antagonize auxin responses. Here we review our current knowledge on the role and mode of action of this class of oligosaccharides in plant defense and development.

23 June 2003 in The Plant Journal
Verified
Journal Article
Closed access
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SFSimone Ferrari
Simone Ferrari
JPJulia M. Plotnikova
Julia M. Plotnikova
GLGiulia De Lorenzo
Giulia De Lorenzo
FAFrederick M. Ausubel
Frederick M. Ausubel

1 May 2008 in Molecular Plant
Verified
Journal Article
Closed access
CDCarine Denoux
Carine Denoux
RGRoberta Galletti
Roberta Galletti
NMNicole Mammarella
Nicole Mammarella
SGSuresh Gopalan
Suresh Gopalan
DWDanièle Werck
Danièle Werck
JDJulia Dewdney
Julia Dewdney
We carried out transcriptional profiling analysis in 10-d-old Arabidopsis thaliana seedlings treated with oligogalacturonides (OGs), oligosaccharides derived from the plant cell wall, or the bacterial flagellin peptide Flg22, general elicitors of the basal defense response in plants. Although detected by different receptors, both OGs and Flg22 trigger a fast and transient response that is both similar and comprehensive, and characterized by activation of early stages of multiple defense signaling pathways, particularly JA-associated processes. However, the response to Flg22 is stronger in both the number of genes differentially expressed and the amplitude of change. The magnitude of induction of individual genes is in both cases dose-dependent, but, even at very high concentrations, OGs do not induce a response that is as comprehensive as that seen with Flg22. While high doses of either microbe-associated molecular pattern (MAMP) elicit a late response that includes activation of senescence processes, SA-dependent secretory pathway genes and PR1 expression are substantially induced only by Flg22. These results suggest a lower threshold for activation of early responses than for sustained or SA-mediated late defenses. Expression patterns of amino-cyclopropane-carboxylate synthase genes also implicate ethylene biosynthesis in regulation of the late innate immune response.

23 March 2007 in Plant Physiology
Verified
Journal Article
Open access
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SFSimone Ferrari
Simone Ferrari
RGRoberta Galletti
Roberta Galletti
CDCarine Denoux
Carine Denoux
GLGiulia De Lorenzo
Giulia De Lorenzo
FAFrederick M. Ausubel
Frederick M. Ausubel
JDJulia Dewdney
Julia Dewdney
Oligogalacturonides (OGs) released from plant cell walls by pathogen polygalacturonases induce a variety of host defense responses. Here we show that in Arabidopsis (Arabidopsis thaliana), OGs increase resistance to the necrotrophic fungal pathogen Botrytis cinerea independently of jasmonate (JA)-, salicylic acid (SA)-, and ethylene (ET)-mediated signaling. Microarray analysis showed that about 50% of the genes regulated by OGs, including genes encoding enzymes involved in secondary metabolism, show a similar change of expression during B. cinerea infection. In particular, expression of PHYTOALEXIN DEFICIENT3 (PAD3) is strongly up-regulated by both OGs and infection independently of SA, JA, and ET. OG treatments do not enhance resistance to B. cinerea in the pad3 mutant or in underinducer after pathogen and stress1, a mutant with severely impaired PAD3 expression in response to OGs. Similarly to OGs, the bacterial flagellin peptide elicitor flg22 also enhanced resistance to B. cinerea in a PAD3-dependent manner, independently of SA, JA, and ET. This work suggests, therefore, that elicitors released from the cell wall during pathogen infection contribute to basal resistance against fungal pathogens through a signaling pathway also activated by pathogen-associated molecular pattern molecules.

26 February 2003 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Closed access
JAJose M. Alonso
Jose M. Alonso
ASAnna N Stepanova
Anna N Stepanova
RSRoberto Solano
Roberto Solano
EWEllen Wisman
Ellen Wisman
SFSimone Ferrari
Simone Ferrari
JEJoseph R. Ecker
Joseph R. Ecker
Five ethylene-insensitive loci ( wei1 – wei5 ) were identified by using a low-dose screen for “weak” ethylene-insensitive mutants. wei1 , wei2 , and wei3 seedlings showed hormone insensitivity only in roots, whereas wei4 and wei5 displayed insensitivity in both roots and hypocotyls. The genes corresponding to wei1 , wei4 , and wei5 were isolated using a positional cloning approach. The wei1 mutant harbored a recessive mutation in TIR1 , which encodes a component of the SCF protein ubiquitin ligase involved in the auxin response. wei4 , a dominant mutant, resulted from a mutation in the ethylene receptor ERS , whereas wei5 , a semidominant mutant, was caused by a mutation in the EIN3 -related transcription factor gene EIL1 . The simultaneous loss of functional WEI5 / EIL1 and EIN3 nearly completely abolished the ethylene response in etiolated seedlings, and adult plants were highly susceptible to infection by the necrotrophic fungal pathogen Botrytis cinerea . Moreover, wei5 / eil1 ein3 double mutants were able to fully suppress constitutive signaling caused by ctr1 , suggesting a synergistic interaction among these gene products. Unlike previously known root ethylene-insensitive mutants, wei2 and wei3 were not affected in their response to auxin and showed a normal response to gravity. Genetic mapping studies indicate that wei2 and wei3 correspond to previously unidentified ethylene pathway genes that may control cell-elongation processes functioning at the intersection of the ethylene and auxin response pathways.

29 July 2011 in Plant Physiology
Verified
Journal Article
Open access
PDF file
RGRoberta Galletti
Roberta Galletti
SFSimone Ferrari
Simone Ferrari
GLGiulia De Lorenzo
Giulia De Lorenzo
Mitogen-activated protein kinases (MAPKs) are fundamental components of the plant innate immune system. MPK3 and MPK6 are Arabidopsis (Arabidopsis thaliana) MAPKs activated by pathogens and elicitors such as oligogalacturonides (OGs), which function as damage-associated molecular patterns, and flg22, a well-known microbe-associated molecular pattern. However, the specific contribution of MPK3 and MPK6 to the regulation of elicitor-induced defense responses is not completely defined. In this work we have investigated the roles played by these MAPKs in elicitor-induced resistance against the fungal pathogen Botrytis cinerea. Analysis of single mapk mutants revealed that lack of MPK3 increases basal susceptibility to the fungus, as previously reported, but does not significantly affect elicitor-induced resistance. Instead, lack of MPK6 has no effect on basal resistance but suppresses OG- and flg22-induced resistance to B. cinerea. Overexpression of the AP2C1 phosphatase leads to impaired OG- and flg22-induced phosphorylation of both MPK3 and MPK6, and to phenotypes that recapitulate those of the single mapk mutants. These data indicate that OG- and flg22-induced defense responses effective against B. cinerea are mainly dependent on MAPKs, with a greater contribution of MPK6.