Muhammad  Ibrahim

Dr. Muhammad Ibrahim


Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 May 2013 in Marine Drugs
Verified
Journal Article
Open access
PDF file
Bin LiBin Li
Bin Li
CSChang-Lin Shan
Chang-Lin Shan
QZQing Zhou
Qing Zhou
YFYuan Fang
Yuan Fang
YWYang-Li Wang
Yang-Li Wang
GSGuo-Chang Sun
Guo-Chang Sun
This present study deals with synthesis, characterization and antibacterial activity of cross-linked chitosan-glutaraldehyde. Results from this study indicated that cross-linked chitosan-glutaraldehyde markedly inhibited the growth of antibiotic-resistant Burkholderia cepacia complex regardless of bacterial species and incubation time while bacterial growth was unaffected by solid chitosan. Furthermore, high temperature treated cross-linked chitosan-glutaraldehyde showed strong antibacterial activity against the selected strain 0901 although the inhibitory effects varied with different temperatures. In addition, physical-chemical and structural characterization revealed that the cross-linking of chitosan with glutaraldehyde resulted in a rougher surface morphology, a characteristic Fourier transform infrared (FTIR) band at 1559 cm−1, a specific X-ray diffraction peak centered at 2θ = 15°, a lower contents of carbon, hydrogen and nitrogen, and a higher stability of glucose units compared to chitosan based on scanning electron microscopic observation, FTIR spectra, X-ray diffraction pattern, as well as elemental and thermo gravimetric analysis. Overall, this study indicated that cross-linked chitosan-glutaraldehyde is promising to be developed as a new antibacterial drug.

18 August 2012 in BMC Microbiology
Verified
Journal Article
Open access
PDF file
YWYanli Wang
Yanli Wang
QZQing Zhou
Qing Zhou
Bin LiBin Li
Bin Li
BLBaoping Liu
Baoping Liu
GWGuo-xing Wu
Guo-xing Wu
GSGuo-Chang Sun
Guo-Chang Sun
Background: Two important plant pathogenic bacteria Acidovorax oryzae and Acidovorax citrulli are closely related and often not easy to be differentiated from each other, which often resulted in a false identification between them based on traditional methods such as carbon source utilization profile, fatty acid methyl esters, and ELISA detection tests. MALDI-TOF MS and Fourier transform infrared (FTIR) spectra have recently been successfully applied in bacterial identification and classification, which provide an alternate method for differentiating the two species. Results: Characterization and comparison of the 10 A. oryzae strains and 10 A. citrulli strains were performed based on traditional bacteriological methods, MALDI-TOF MS, and FTIR spectroscopy. Our results showed that the identity of the two closely related plant pathogenic bacteria A. oryzae and A. citrulli was able to be confirmed by both pathogenicity tests and species-specific PCR, but the two species were difficult to be differentiated based on Biolog and FAME profile as well as 16 S rRNA sequence analysis. However, there were significant differences in MALDI-TOF MS and FTIR spectra between the two species of Acidovorax. MALDI-TOF MS revealed that 22 and 18 peaks were specific to A. oryzae and A. citrulli, respectively, while FTIR spectra of the two species of Acidovorax have the specific peaks at 1738, 1311, 1128, 1078, 989 cm-1 and at 1337, 968, 933, 916, 786 cm-1, respectively. Conclusions: This study indicated that MALDI-TOF MS and FTIR spectra may give a new strategy for rapid bacterial identification and differentiation of the two closely related species of Acidovorax.

1 March 2017 in Journal of Global Antimicrobial Resistance
Verified
Journal Article
Closed access
BZBo Zhu
Bo Zhu
SWSai Wang
Sai Wang
OLOu Li
Ou Li
AHAnnam Hussain
Annam Hussain
Abrar HussainAbrar Hussain
Abrar Hussain
MIMuhammad Ibrahim
Muhammad Ibrahim

9 July 2014 in Molecules
Verified
Journal Article
Open access
PDF file
ZCZhouqi Cui
Zhouqi Cui
MIMuhammad Ibrahim
Muhammad Ibrahim
CYChunlan Yang
Chunlan Yang
YFYuan Fang
Yuan Fang
HAHussain Annam
Hussain Annam
GSGuo-Chang Sun
Guo-Chang Sun
Burkholderia glumae has been proposed to have a potential risk to vulnerable communities. In this work, we investigated the antibacterial activity and mechanism of copper surfaces against multi-drug resistant B. glumae from both patients and rice plants. The susceptibility of B. glumae to copper surfaces was noted by a significant decline in viable bacterial counts, relative to the slight reduction of stainless steel and polyvinylchloride, both of which were used as control surfaces. The mode of action of bacterial killing was determined by examing the mutagenicity, DNA damage, copper ions accumulation, and membrane damage in bacterial cells. The results indicated that the cells exposed to copper surfaces did not cause severe DNA lesions or increase the mutation frequencies, but resulted in a loss of cell membrane integrity within minutes. Furthermore, bacterial cells exposed to copper surfaces accumulated significantly higher amounts of copper compared to control surfaces. Overall, this study showed that metallic copper had strong antibacterial effect against B. glumae by causing DNA and membrane damage, cellular accumulation of copper, and cell death following DNA degradation, which could be utilized to reduce the risk of bacterial contamination and infection.

1 January 2018 in Evolutionary Bioinformatics
Verified
Journal Article
Open access
FNFarah Nazir
Farah Nazir
MIMuhammad Ibrahim
Muhammad Ibrahim
GZGhunva Zaman
Ghunva Zaman
AHAnnam Hussain
Annam Hussain
AYAsma Muhammad Yar
Asma Muhammad Yar
BZBo Zhu
Bo Zhu
Sigma factors are bacterial transcription factors that bind the core RNA polymerase and direct transcription initiation at a specific promoter site. These specialized sigma factors bind the promoters of genes appropriate to the environmental conditions and selectively increase the transcription of those genes. Here, we attempt to identify sigma factors in 5 genomes belonging to the Enterobacter cloacae complex (Ecc), a group of gram-negative bacteria that are important nosocomial pathogens. This process includes the identification of orthologous sequences, conserved motifs, domains, families, phylogenetic profiles, and protein-protein associations of these components. Based on the reference genome, genome-wide comparison revealed that the genomes of Enterobacter asburiae JCM6051, Enterobacter nimipressuralis CIP 104980, Enterobacter hormaechei ATCC49162, Enterobacter kobei JCM 8580, and Enterobacter ludwigii EN-119 encode 10 sigma factors that exist in the reference strain Enterobacter cloacae subsp cloacae ATCC13047. Moreover, the sequence similarity, protein domains and families of the sigma factors, protein-protein association, and phylogenetic profile indicate that the sigma factor proteins of these 5 strains may have evolutionary relatedness and functional characteristics important to their various environmental niches. Interestingly, the absence of RpoS in E kobei, which contributes to bacterial survival under environmental stress conditions, indicates that RpoS might have been independently acquired and may play different roles relating to pathogenicity, host range determination, and/or niche adaptation. Future work such as RNA sequencing will be directed towards investigating the roles that these sigma factors play in the biology of the Ecc.

1 June 2018 in Journal of Global Antimicrobial Resistance
Verified
Journal Article
Closed access
MIMuhammad Ibrahim
Muhammad Ibrahim
AYAsma Muhammad Yar
Asma Muhammad Yar
GZGhunva Zaman
Ghunva Zaman
CYChanghui Yan
Changhui Yan
MKMuhammad Khurshid
Muhammad Khurshid
HBHabib Bokhari
Habib Bokhari