Circadian clocks control many self-sustained rhythms in physiology and behavior with approximately 24-hour periodicity. In many organisms, oxidative stress and aging negatively impact the circadian system and sleep. Conversely, loss of the clock decreases resistance to oxidative stress, and may reduce lifespan and speed up brain aging and neurodegeneration. Here we examined the effects of clock disruptions on locomotor aging and longevity in Drosophila. We found that lifespan was similarly reduced in three arrhythmic mutants (ClkAR, cyc0 and tim0) and in wild-type flies under constant light, which stops the clock. In contrast, ClkAR mutants showed significantly faster age-related locomotor deficits (as monitored by startle-induced climbing) than cyc0 and tim0, or than control flies under constant light. Reactive oxygen species accumulated more with age in ClkAR mutant brains, but this did not appear to contribute to the accelerated locomotor decline of the mutant. Clk, but not Cyc, inactivation by RNA interference in the pigment-dispersing factor (PDF)-expressing central pacemaker neurons led to similar loss of climbing performance as ClkAR. Conversely, restoring Clk function in these cells was sufficient to rescue the ClkAR locomotor phenotype, independently of behavioral rhythmicity. Accelerated locomotor decline of the ClkAR mutant required expression of the PDF receptor and correlated to an apparent loss of dopaminergic neurons in the posterior protocerebral lateral 1 (PPL1) clusters. This neuronal loss was rescued when the ClkAR mutation was placed in an apoptosis-deficient background. Impairing dopamine synthesis in a single pair of PPL1 neurons that innervate the mushroom bodies accelerated locomotor decline in otherwise wild-type flies. Our results therefore reveal a novel circadian-independent requirement for Clk in brain circadian neurons to maintain a subset of dopaminergic cells and avoid premature locomotor aging in Drosophila. Circadian clocks are highly conserved from flies to humans. They control rhythms in most physiological functions, with free-running periods close to 24 h. Clock disruption, as occurs in shift-work or jet lag, is increasingly suspected to reduce healthspan. Aging and neurodegenerative disorders, like Parkinson’s disease, often disrupt biological clocks early on. It is thus important to understand, and eventually block, a vicious circle that could contribute to accelerated aging. Here we studied the effects of mutations in three Drosophila core circadian genes (timeless, cycle and Clock) on lifespan and age-related locomotor impairment, an almost universal hallmark of animal and human senescence. We found that expression of Clock in the main circadian pacemaker neurons is necessary to avoid premature locomotor aging, independently of its circadian function. Clock deficiency in circadian neurons disrupted specific dopaminergic neurons in aging mutant flies, with the involvement of pro-apoptotic pathways, while inhibiting dopamine synthesis in a single pair of these neurons also led to early locomotor decline. This reveals an unexpected link between circadian and dopaminergic circuits in the fly brain, which may be of broad significance to unravel the reciprocal influence between two prominent pathological features of Parkinson's disease: circadian system dysfunction and dopaminergic neurodegeneration.