Mohammad Syamsul Reza Harun

Dr. Mohammad Syamsul Reza Harun

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Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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19 September 2015 in Apoptosis
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Journal Article
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ASAhmad Naqib Shuid
Ahmad Naqib Shuid
NSNikoo Safi
Nikoo Safi
AHAmin Haghani
Amin Haghani
Parvaneh MehrbodParvaneh Mehrbod
Parvaneh Mehrbod
MHMohammad Syamsul Reza Harun
Mohammad Syamsul Reza Harun
AOAbdul Rahman OMAR
Abdul Rahman OMAR

9 November 2013 in Virology Journal
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Journal Article
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MHMohammad Syamsul Reza Harun
Mohammad Syamsul Reza Harun
CKChoong Oi Kuan
Choong Oi Kuan
GSGAYATHRI THEVI SELVARAJAH
GAYATHRI THEVI SELVARAJAH
STSheau Wei Tan
Sheau Wei Tan
SASiti Suri Arshad
Siti Suri Arshad
AOAbdul Rahman OMAR
Abdul Rahman OMAR
Background: Feline Infectious Peritonitis (FIP) is a lethal systemic disease, caused by the FIP Virus (FIPV); a virulent mutant of Feline Enteric Coronavirus (FECV). Currently, the viruses virulence determinants and host gene expressions during FIPV infection are not fully understood. Methods: RNA sequencing of Crandell Rees Feline Kidney (CRFK) cells, infected with FIPV strain 79–1146 at 3 hours post infection (h.p.i), were sequenced using the Illumina next generation sequencing approach. Bioinformatic’s analysis, based on Felis catus 2X annotated shotgun reference genome, using CLC bio Genome Workbench mapped both control and infected cell reads to 18899 genes out of 19046 annotated genes. Kal’s Z test statistical analysis was used to analyse the differentially expressed genes from the infected CRFK cells. Real time RT-qPCR was developed for further transcriptional profiling of three genes (PD-1, PD-L1 and A3H) in infected CRFK cells and Peripheral Blood Mononuclear Cells (PBMCs) from healthy and FIP-diseased cats. Results: Based on Kal’s Z-test, with False Discovery Rate (FDR) 1.99 fold change on gene expressions, a total of 61 genes were differentially expressed by both samples, where 44 genes were up-regulated and the remainder were down-regulated. Most genes were closely clustered together, suggesting a homogeneous expression. The majority of the genes that were significantly regulated, were those associated with monocytes-macrophage and Th1 cell functions, and the regulation of apoptosis. Real time RT-qPCR developed focusing on 2 up-regulated genes (PD-L1 and A3H) together with an apoptosis associated gene PD-1 expressions in FIPV infected CRFK cells and in PBMCs from healthy and FIP diagnosed cats produced concordant results with transcriptome data. Conclusion: The possible roles of these genes, and their importance in feline coronaviruses infection, are discussed.

20 March 2019 in Analytical Methods
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Journal Article
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HEHany Elsheikha
Hany Elsheikha
NENashwa A. Elsaied
Nashwa A. Elsaied
KCKa Lung Andrew Chan
Ka Lung Andrew Chan
CBChris Brignell
Chris Brignell
MHMohammad Syamsul Reza Harun
Mohammad Syamsul Reza Harun
GCG. Cinquee
G. Cinquee
The protozoan Toxoplasma gondii is responsible for severe, potentially life-threatening, infection in immunocompromised individuals and when acquired during pregnancy. In the meantime, there is no available vaccine and the anti-T. gondii drug arsenal is limited. An important challenge to improve antiparasitic therapy is to understand chemical changes that occur during infection. Here, we used Fourier transform infrared spectroscopy (FTIR) to investigate the effect of T. gondii infection on the chemical composition of human brain microvascular endothelial cells (hBMECs) at 3, 6, 24 and 48 hours postinfection (hpi). Principal component analysis (PCA) showed that the best separation and largest difference between infected and uninfected hBMECs was detected at 24 hpi and within the 3400–2800 cm−1 region. At 48 hpi, although the difference between samples was obvious within the 3400–2800 cm−1 region, more differences were detected in the fingerprint region. These findings indicate that infected and control cells can be easily distinguished. Although differences between the spectra varied, the separation was most clear at 24 hpi. T. gondii increased signals for lipids (2853 cm−1) and nucleic acids (976 cm−1, 1097 cm−1 and 1245 cm−1), and decreased signals for proteins (3289 cm−1, 2963 cm−1, 2875 cm−1) in infected cells compared to controls. These results, supported by amino acid levels in culture media, and global metabolomic and gene expression analyses of hBMECs, suggest that T. gondii parasite exploits a wide range of host-derived chemical compounds and signaling pathways for its own survival and proliferation within host cells. Our data demonstrate that FTIR combined with chemometric analysis is a valuable approach to elucidate the temporal, infection-specific, chemical alterations in host cells at a single cell resolution.

12 February 2015
Verified
Book Chapter
Closed access
Parvaneh MehrbodParvaneh Mehrbod
Parvaneh Mehrbod
MHMohammad Syamsul Reza Harun
Mohammad Syamsul Reza Harun
ASAhmad Naqib Shuid
Ahmad Naqib Shuid
AOAbdul Rahman OMAR
Abdul Rahman OMAR

4 June 2020 in Microorganisms
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MHMohammad Syamsul Reza Harun
Mohammad Syamsul Reza Harun
MTMica Taylor
Mica Taylor
XZXing-Quan Zhu
Xing-Quan Zhu
HEHany Elsheikha
Hany Elsheikha
Central to the progression of cerebral toxoplasmosis is the interaction of Toxoplasma gondii with the blood-brain barrier (BBB) endothelial cells. In the present work, we tested the hypothesis that inhibition of Wnt pathway signalling by the monovalent ionophore monensin reduces the growth of T. gondii infecting human brain microvascular endothelial cells (hBMECs) or microglial cells. The anti-parasitic effect of monensin (a Wnt signalling inhibitor) on the in vitro growth of T. gondii tachyzoites was investigated using two methods (Sulforhodamine B staining and microscopic parasite counting). The monensin inhibited T. gondii growth (50% inhibitory concentration [IC50] = 0.61 μM) with a selective index = 8.48 when tested against hBMECs (50% cytotoxic concentration [CC50] = 5.17 μM). However, IC50 of monensin was 4.13 μM with a SI = 13.82 when tested against microglia cells (CC50 = 57.08 μM), suggesting less sensitivity of microglia cells to monensin treatment. The effect of T. gondii on the integrity of the BBB was assessed by the transendothelial electrical resistance (TEER) assay using an in vitro human BBB model. The results showed that T. gondii infection significantly decreased hBMECs’ TEER resistance, which was rescued when cells were treated with 0.1 µM monensin, probably due to the anti-parasitic activity of monensin. We also investigated the host-targeted effects of 0.1 µM monensin on global gene expression in hBMECs with or without T. gondii infection. Treatment of hBMECs with monensin did not significantly influence the expression of genes involved in the Wnt signalling pathway, suggesting that although inhibition of the Wnt signalling pathway did not play a significant role in T. gondii infection of hBMECs, monensin was still effective in limiting the growth of T. gondii. On the contrary, monensin treatment downregulated pathways related to steroids, cholesterol and protein biosynthesis and their transport between endoplasmic reticulum and Golgi apparatus, and deregulated pathways related to cell cycle and DNA synthesis and repair mechanisms. These results provide new insight into the host-modulatory effect of monensin during T. gondii infection, which merits further investigation.

25 February 2022 in Cells
Verified
Journal Article
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HEHany Elsheikha
Hany Elsheikha
AAAlaa T. Al-Sandaqchi
Alaa T. Al-Sandaqchi
MHMohammad Syamsul Reza Harun
Mohammad Syamsul Reza Harun
FWFrancesca Winterton
Francesca Winterton
AAAli Altharawi
Ali Altharawi
KCKa Lung Andrew Chan
Ka Lung Andrew Chan
Toxoplasma gondii (T. gondii) is an opportunistic protozoan that can cause brain infection and other serious health consequences in immuno-compromised individuals. This parasite has a remarkable ability to cross biological barriers and exploit the host cell microenvironment to support its own survival and growth. Recent advances in label-free spectroscopic imaging techniques have made it possible to study biological systems at a high spatial resolution. In this study, we used conventional Fourier-transform infrared (FTIR) microspectroscopy and synchrotron-based FTIR microspectroscopy to analyze the chemical changes that are associated with infection of human brain microvascular endothelial cells (hBMECs) by T. gondii (RH) tachyzoites. Both FTIR microspectroscopic methods showed utility in revealing the chemical alterations in the infected hBMECs. Using a ZnS hemisphere device, to increase the numerical aperture, and the synchrotron source to increase the brightness, we obtained spatially resolved spectra from within a single cell. The spectra extracted from the nucleus and cytosol containing the tachyzoites were clearly distinguished. RNA sequencing analysis of T. gondii-infected and uninfected hBMECs revealed significant changes in the expression of host cell genes and pathways in response to T. gondii infection. These FTIR spectroscopic and transcriptomic findings provide significant insight into the molecular changes that occur in hBMECs during T. gondii infection.