Background: Chest CT is used for the assessment of the severity of patients infected with novel coronavirus 2019 (COVID-19). We collected chest CT scans of 202 patients diagnosed with the COVID-19, and try to develop a rapid, accurate and automatic tool for severity screening follow-up therapeutic treatment.Methods: A total of 729 2D axial plan slices with 246 severe cases and 483 non-severe cases were employed in this study. By taking the advantages of the pre-trained deep neural network, four pre-trained off-the-shelf deep models (Inception-V3, ResNet-50, ResNet-101, DenseNet-201) were exploited to extract the features from these CT scans. These features are then fed to multiple classifiers (linear discriminant, linear SVM, cubic SVM, KNN and Adaboost decision tree) to identify the severe and non-severe COVID-19 cases. Three validation strategies (holdout validation, tenfold cross-validation and leave-one-out) are employed to validate the feasibility of proposed pipelines.Results and conclusion: The experimental results demonstrate that classification of the features from pre-trained deep models shows the promising application in COVID-19 severity screening, whereas the DenseNet-201 with cubic SVM model achieved the best performance. Specifically, it achieved the highest severity classification accuracy of 95.20% and 95.34% for tenfold cross-validation and leave-one-out, respectively. The established pipeline was able to achieve a rapid and accurate identification of the severity of COVID-19. This may assist the physicians to make more efficient and reliable decisions.
4 October 2022 in Multimedia Tools and Applications
The guided filter has been acknowledged as an exceptional edge‐preserving filter whose output is a locally linear transform of the guidance image. However, the traditional guided filter heavily relies on the guidance image and fails to achieve the desired result when performing image denoising without a clear guidance image. In this study, to address this limitation, the authors propose a simple yet effective guided filter variant for the single image noise removing. They further show that the proposed denoising strategy can be easily realised by using the iterative framework. Moreover, the weak textured patches based image noise estimation is utilised to generate a clear intermediate image which makes the proposed method highly adaptable to the local noise level. Experimental results demonstrate that their proposed algorithm can compete with the state‐of‐the‐art local denoising methods in edge‐preserving.
11 June 2025 in IEEE Journal of Biomedical and Health Informatics
Medical image segmentation remains a challenging task due to the intricate nature of anatomical structures and the wide range of target sizes. In this paper, we propose a novel U -shaped segmentation network that integrates CNN and Transformer architectures to address these challenges. Specifically, our network architecture consists of three main components. In the encoder, we integrate an attention-guided multi-scale feature extraction module with a dual-path downsampling block to learn hierarchical features. The decoder employs an advanced feature aggregation and fusion module that effectively models inter-dependencies across different hierarchical levels. For the bottleneck, we explore multi-scale feature activation and multi-layer context Transformer modules to facilitate high-level semantic feature learning and global context modeling. Additionally, we implement a multi-resolution input-output strategy throughout the network to enrich feature representations and ensure fine-grained segmentation outputs across different scales. The experimental results on diverse multi-modal medical image datasets (ultrasound, gastrointestinal polyp, MR, and CT images) demonstrate that our approach can achieve superior performance over state-of-the-art methods in both quantitative measurements and qualitative assessments. The code is available at https://github.com/zsj0577/MSAGHNet.
7 August 2024 in Biomedical Signal Processing and Control
Extramammary Paget’s disease (EMPD) is a rare, malignant cutaneous adenocarcinoma with a high recurrence rate after surgical resection. Early diagnosis of EMPD is critical as 15%–40% of cases progress into an invasive form and resulting in a dismal prognosis. However, EMPD can be a diagnostic challenge to pathologists, especially in the grassroots hospital, because of its low incidence and nonspecific clinical presentation. Although AI-enabled computer-aided diagnosis solutions have been extensively used in dermatological pathological image analysis to diagnose common skin cancers such as melanoma and basal cell carcinoma, these techniques have yet been applied to diagnose EMPD. Here, we developed and verified a deep learning method with five different deep convolutional neural networks, named ResNet34, ResNet50, MobileNetV2, GoogLeNet, and VGG16, in Asian EMPD pathological image screening to distinguish between Paget’s and normal cells. We further demonstrated that the results of the proposed method are quantitative, fast, and repeatable by a retrospective single-center study. The ResNet34 model achieved the best performance with an accuracy of 95.522% in pathological images collected at a magnification of ×40. We envision this method can potentially empower grassroots pathologists’ efficiency and accuracy as well as to ultimately provide better patient care.