Hiroshi Nakagawa

Dr. Hiroshi Nakagawa

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Research Focus & Metrics

Academic Career Length

27Years (2000-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 November 2019 in Frontiers in Chemistry
Verified
Journal Article
Open access
HNHiroshi Nakagawa
Hiroshi Nakagawa
TOTaiji Oyama
Taiji Oyama
Water activity (Aw) is a reliable indication of the microbial growth, enzymatic activity, preservation, and quality of foods. However, a molecular basis of Aw is still under debate in multiple related disciplines. Glycerol–water mixtures can provide a variation of Aws by controlling the ratio of glycerol and water. In this study, the molecular basis of Aw was examined by using differential scanning calorimetry (DSC), attenuated total reflection Fourier-transform infrared spectroscopy (ATR-IR), and incoherent quasi-elastic neutron scattering (IQENS) based on moisture sorption isotherms of glycerol–water mixtures. Three regions were identified and classified based on DSC results. DSC showed that bulk-like water existed at Aw > ≈ 0.7 at 27°C. Hydrogen bonding related molecular vibrations were analyzed by ATR-IR, which indicated that the OH stretching in water molecules is significantly different for Aw > ≈ 0.7. Translational diffusive and/or rotational motions in time and space analyzed by IQENS appeared when Aw > ≈ 0.7, and are correlated with hydrogen bonding related local vibrational dynamics in the glycerol–water mixtures. More importantly, Aw values of glycerol–water mixtures can be explained by the hydrogen bonding network and molecular dynamics of water in the solution. We discuss the implications of Aw in the preservation of food at the molecular level.

24 November 2023 in Journal of Applied Crystallography
Verified
Journal Article
Closed access
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TKTakayuki Kumada
Takayuki Kumada
RMRyuhei MOTOKAWA
Ryuhei MOTOKAWA
YOYojiro Oba
Yojiro Oba
HNHiroshi Nakagawa
Hiroshi Nakagawa
YSYurina Sekine
Yurina Sekine
HIHiroki Iwase
Hiroki Iwase

18 October 2021 in Frontiers in Chemistry
Verified
Journal Article
Open access
HNHiroshi Nakagawa
Hiroshi Nakagawa
TTTaro Tamada
Taro Tamada
Protein hydration is crucial for the stability and molecular recognition of a protein. Water molecules form a hydration water network on a protein surface via hydrogen bonds. This study examined the hydration structure and hydrogen bonding state of a protein, staphylococcal nuclease, at various hydration levels in its crystalline state by all-atom molecular dynamics (MD) simulation. Hydrophilic residues were more hydrated than hydrophobic residues. As the water content increases, both types of residues were uniformly more hydrated. The number of hydrogen bonds per single water asymptotically approaches 4, the same as bulk water. The distances and angles of hydrogen bonds in hydration water in the protein crystal were almost the same as those in the tetrahedral structure of bulk water regardless of the hydration level. The hydrogen bond structure of hydration water observed by MD simulations of the protein crystalline state was compared to the Hydrogen and Hydration Database for Biomolecule from experimental protein crystals.

2 April 2023 in Food Hydrocolloids
Verified
Journal Article
Closed access
YHYoshinobu Hirata
Yoshinobu Hirata
HNHiroshi Nakagawa
Hiroshi Nakagawa
HYHiroki Yamauchi
Hiroki Yamauchi
KKKoji Kaneko
Koji Kaneko
MHMasato Hagihala
Masato Hagihala
TNTakahisa Nishizu
Takahisa Nishizu


1 August 2021 in Biophysical Journal
Verified
Journal Article
Closed access
HNHiroshi Nakagawa
Hiroshi Nakagawa
TSTomohide Saio
Tomohide Saio
MNMichihiro Nagao
Michihiro Nagao
RIRintaro Inoue
Rintaro Inoue
MSMasaaki Sugiyama
Masaaki Sugiyama
YKYukinobu Kawakita
Yukinobu Kawakita