Ajaybabu Pobbati

Dr. Ajaybabu Pobbati

1. Department of Cancer Biology, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH 44195, USA
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Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 May 2013 in Cancer Biology & Therapy
Verified
Journal Article
Open access
Ajaybabu PobbatiAjaybabu Pobbati
Ajaybabu Pobbati
WHWanjin Hong
Wanjin Hong
TEAD proteins are transcription factors that are crucial for development, but also play a role in cancers. Several developmentally and pathologically important genes are upregulated by TEADs. TEADs...

1 November 2015 in Structure
Verified
Journal Article
Closed access
Ajaybabu PobbatiAjaybabu Pobbati
Ajaybabu Pobbati
XHXiao Han
Xiao Han
AHAlvin W. Hung
Alvin W. Hung
WSWei Guang Seetoh
Wei Guang Seetoh
NHNur Huda
Nur Huda
APAnders Poulsen
Anders Poulsen

1 July 2012 in Structure
Verified
Journal Article
Closed access
Ajaybabu PobbatiAjaybabu Pobbati
Ajaybabu Pobbati
SCSiew Wee Chan
Siew Wee Chan
ILIan Lee
Ian Lee
HSHaiwei Song
Haiwei Song
WHWanjin Hong
Wanjin Hong

25 March 2021 in Genes & Development
Verified
Journal Article
Open access
PDF file
CSCaleb Nathaniel Seavey
Caleb Nathaniel Seavey
Ajaybabu PobbatiAjaybabu Pobbati
Ajaybabu Pobbati
AHAndrea Hallett
Andrea Hallett
SMShuang Ma
Shuang Ma
JRJordan P. Reynolds
Jordan P. Reynolds
BRBrian P. Rubin
Brian P. Rubin
Epithelioid hemangioendothelioma (EHE) is a genetically homogenous vascular sarcoma that is a paradigm for TAZ dysregulation in cancer. EHE harbors a WWTR1(TAZ)-CAMTA1 gene fusion in >90% of cases, 45% of which have no other genetic alterations. In this study, we used a first of its kind approach to target the Wwtr1-Camta1 gene fusion to the Wwtr1 locus, to develop a conditional EHE mouse model whereby Wwtr1-Camta1 is controlled by the endogenous transcriptional regulators upon Cre activation. These mice develop EHE tumors that are indistinguishable from human EHE clinically, histologically, immunohistochemically, and genetically. Overall, these results demonstrate unequivocally that TAZ-CAMTA1 is sufficient to drive EHE formation with exquisite specificity, as no other tumor types were observed. Furthermore, we fully credential this unique EHE mouse model as a valid preclinical model for understanding the role of TAZ dysregulation in cancer formation and for testing therapies directed at TAZ-CAMTA1, TAZ, and YAP/TAZ signaling.

10 September 2020 in Journal of Medicinal Chemistry
Verified
Journal Article
Open access
HKHacer Karatas
Hacer Karatas
MAMohammad Akbarzadeh
Mohammad Akbarzadeh
HAHélène Adihou
Hélène Adihou
GHGernot Hahne
Gernot Hahne
Ajaybabu PobbatiAjaybabu Pobbati
Ajaybabu Pobbati
HWHerbert Waldmann
Herbert Waldmann
Transcriptional enhanced associate domain (TEAD) transcription factors together with coactivators and corepressors modulate the expression of genes that regulate fundamental processes, as organogenesis and cell growth, and elevated TEAD activity is associated with tumorigenesis. Hence novel modulators of TEAD and methods for their identification are in high demand. We describe the development of a new “thiol conjugation assay” for identification of novel small molecules that bind to the TEAD central pocket. The assay monitors prevention of covalent binding of a fluorescence turn-on probe to a cysteine in the central pocket by small molecules. Screening of a collection of compounds revealed kojic acid analogs as TEAD inhibitors, which covalently targets the cysteine in the central pocket, blocks the interaction with coactivator Yes-Associated Protein (YAP) with nanomolar apparent IC50 values and reduces TEAD target gene expression. This methodology promises to enable new medicinal chemistry programs aimed at the modulation of TEAD activity.

18 December 2020 in Molecules
Verified
Journal Article
Open access
PDF file
Ajaybabu PobbatiAjaybabu Pobbati
Ajaybabu Pobbati
BRBrian P. Rubin
Brian P. Rubin
The identification of protein-protein interaction disruptors (PPIDs) that disrupt the YAP/TAZ-TEAD interaction has gained considerable momentum. Several studies have shown that YAP/TAZ are no longer oncogenic when their interaction with the TEAD family of transcription factors is disrupted. The transcriptional co-regulator YAP (its homolog TAZ) interact with the surface pockets of TEADs. Peptidomimetic modalities like cystine-dense peptides and YAP cyclic and linear peptides exploit surface pockets (interface 2 and interface 3) on TEADs and function as PPIDs. The TEAD surface might pose a challenge for generating an effective small molecule PPID. Interestingly, TEADs also have a central pocket that is distinct from the surface pockets, and which small molecules leverage exclusively to disrupt the YAP/TAZ-TEAD interaction (allosteric PPIDs). Although small molecules that occupy the central pocket belong to diverse classes, they display certain common features. They are flexible, which allows them to adopt a palmitate-like conformation, and they have a predominant hydrophobic portion that contacts several hydrophobic residues and a small hydrophilic portion that faces the central pocket opening. Despite such progress, more selective PPIDs that also display favorable pharmacokinetic properties and show tolerable toxicity profiles are required to evaluate the feasibility of using these PPIDs for cancer therapy.