Hanna Oksanen

Dr. Hanna Oksanen

Molecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland
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Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 January 2023 in Archives of Virology
Verified
Journal Article
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University EnglandUniversity England
University England
ASAndrey N Shkoporov
Andrey N Shkoporov
CLCédric Lood
Cédric Lood
AKAndrew Kropinski
Andrew Kropinski
BDBas E. Dutilh
Bas E. Dutilh
EAEvelien Adriaenssens
Evelien Adriaenssens
This article summarises the activities of the Bacterial Viruses Subcommittee of the International Committee on Taxonomy of Viruses for the period of March 2021−March 2022. We provide an overview of the new taxa proposed in 2021, approved by the Executive Committee, and ratified by vote in 2022. Significant changes to the taxonomy of bacterial viruses were introduced: the paraphyletic morphological families Podoviridae, Siphoviridae, and Myoviridae as well as the order Caudovirales were abolished, and a binomial system of nomenclature for species was established. In addition, one order, 22 families, 30 subfamilies, 321 genera, and 862 species were newly created, promoted, or moved.

23 August 2022 in Archives of Virology
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Journal Article
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PWPeter J. Walker
Peter J. Walker
SSStuart G. Siddell
Stuart G. Siddell
ELElliot Lefkowitz
Elliot Lefkowitz
AMArcady Mushegian
Arcady Mushegian
EAEvelien Adriaenssens
Evelien Adriaenssens
FZFrancisco Murilo Zerbini
Francisco Murilo Zerbini


11 March 2020 in Archives of Virology
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Journal Article
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EAEvelien Adriaenssens
Evelien Adriaenssens
MSMatthew B Sullivan
Matthew B Sullivan
PKPetar Knezevic
Petar Knezevic
LZLeonardo Van Zyl
Leonardo Van Zyl
BSB. L. Sarkar
B. L. Sarkar
MKMart Krupovic
Mart Krupovic

15 September 2021 in Open Biology
Verified
Journal Article
Open access
SMSari Mäntynen
Sari Mäntynen
ELElina Laanto
Elina Laanto
Hanna OksanenHanna Oksanen
Hanna Oksanen
MPMinna Poranen
Minna Poranen
SDSamuel L. Díaz-Muñoz
Samuel L. Díaz-Muñoz
The canonical lytic–lysogenic binary has been challenged in recent years, as more evidence has emerged on alternative bacteriophage infection strategies. These infection modes are little studied, and yet they appear to be more abundant and ubiquitous in nature than previously recognized, and can play a significant role in the ecology and evolution of their bacterial hosts. In this review, we discuss the extent, causes and consequences of alternative phage lifestyles, and clarify conceptual and terminological confusion to facilitate research progress. We propose distinct definitions for the terms ‘pseudolysogeny’ and ‘productive or non-productive chronic infection’, and distinguish them from the carrier state life cycle, which describes a population-level phenomenon. Our review also finds that phages may change their infection modes in response to environmental conditions or the physiological state of the host cell. We outline known molecular mechanisms underlying the alternative phage–host interactions, including specific genetic pathways and their considerable biotechnological potential. Moreover, we discuss potential implications of the alternative phage lifestyles for microbial biology and ecosystem functioning, as well as applied topics such as phage therapy.

17 October 2011 in Environmental Microbiology
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Journal Article
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NANina Atanasova
Nina Atanasova
ERElina Roine
Elina Roine
AOAharon Oren
Aharon Oren
DBDennis Bamford
Dennis Bamford
Hanna OksanenHanna Oksanen
Hanna Oksanen
Summary: Hypersaline environments are dominated by archaea and bacteria and are almost entirely devoid of eukaryotic organisms. In addition, hypersaline environments contain considerable numbers of viruses. Currently, there is only a limited amount of information about these haloviruses. The ones described in detail mostly resemble head‐tail bacteriophages, whereas observations based on direct microscopy of the hypersaline environmental samples highlight the abundance of non‐tailed virus‐like particles. Here we studied nine spatially distant hypersaline environments for the isolation of new halophilic archaea (61 isolates), halophilic bacteria (24 isolates) and their viruses (49 isolates) using a culture‐dependent approach. The obtained virus isolates approximately double the number of currently described archaeal viruses. The new isolates could be divided into three tailed and two non‐tailed virus morphotypes, suggesting that both types of viruses are widely distributed and characteristic for haloarchaeal viruses. We determined the sensitivity of the hosts against all isolated viruses. It appeared that the host ranges of numerous viruses extend to hosts in distant locations, supporting the idea that there is a global exchange of microbes and their viruses. It suggests that hypersaline environments worldwide function like a single habitat.