Hakimeh Zali

Dr. Hakimeh Zali

orcid

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 June 2021 in Biomedicine & Pharmacotherapy
Verified
Journal Article
Open access
ZMZahra Molavi
Zahra Molavi
SRSara Razi
Sara Razi
SMSeyed Amir Mirmotalebisohi
Seyed Amir Mirmotalebisohi
AAAmirjafar Adibi
Amirjafar Adibi
MSMarzieh Sameni
Marzieh Sameni
MYMohsen Yazdani
Mohsen Yazdani
The RNA-dependent RNA polymerase (RdRp) and 3C-like protease (3CLpro) from SARS-CoV-2 play crucial roles in the viral life cycle and are considered the most promising targets for drug discovery against SARS-CoV-2. In this study, FDA-approved drugs were screened to identify the probable anti-RdRp and 3CLpro inhibitors by molecular docking approach. The number of ligands selected from the PubChem database of NCBI for screening was 1760. Ligands were energy minimized using Open Babel. The RdRp and 3CLpro protein sequences were retrieved from the NCBI database. For Homology Modeling predictions, we used the Swiss model server. Their structure was then energetically minimized using SPDB viewer software and visualized in the CHIMERA UCSF software. Molecular dockings were performed using AutoDock Vina, and candidate drugs were selected based on binding affinity (∆G). Hydrogen bonding and hydrophobic interactions between ligands and proteins were visualized using Ligplot and the Discovery Studio Visualizer v3.0 software. Our results showed 58 drugs against RdRp, which had binding energy of − 8.5 or less, and 69 drugs to inhibit the 3CLpro enzyme with a binding energy of − 8.1 or less. Six drugs based on binding energy and number of hydrogen bonds were chosen for the next step of molecular dynamics (MD) simulations to investigate drug-protein interactions (including Nilotinib, Imatinib and dihydroergotamine for 3clpro and Lapatinib, Dexasone and Relategravir for RdRp). Except for Lapatinib, other drugs-complexes were stable during MD simulation. Raltegravir, an anti-HIV drug, was observed to be the best compound against RdRp based on docking binding energy (− 9.5 kcal/mole) and MD results. According to the MD results and binding energy, dihydroergotamine is a suitable candidate for 3clpro inhibition (− 9.6 kcal/mol). These drugs were classified into several categories, including antiviral, antibacterial, anti-inflammatory, anti-allergic, cardiovascular, anticoagulant, BPH and impotence, antipsychotic, antimigraine, anticancer, and so on. The common prescription-indications for some of these medication categories appeared somewhat in line with manifestations of COVID-19. We hope that they can be beneficial for patients with certain specific symptoms of SARS-CoV-2 infection, but they can also probably inhibit viral enzymes. We recommend further experimental evaluations in vitro and in vivo on these FDA-approved drugs to assess their potential antiviral effect on SARS-CoV-2.

21 June 2022 in Stem Cell Research & Therapy
Verified
Journal Article
Open access
PDF file
FMFariba Mohebichamkhorami
Fariba Mohebichamkhorami
RFRoya Fattahi
Roya Fattahi
ZNZahra Niknam
Zahra Niknam
MAMorteza Aliashrafi
Morteza Aliashrafi
SNSahar Khakpour Naeimi
Sahar Khakpour Naeimi
HZHakimeh Zali
Hakimeh Zali
Background: The damaged neuronal cells of adult mammalian lack the regenerative ability to replace the neuronal connections. Periodontal ligament stem cells (PDLSCs) are the promising source for neuroregenerative applications that can improve the injured microenvironment of the damaged neural system. They provide neuronal progenitors and neurotrophic, anti-apoptotic and anti-inflammatory factors. In this study, we aimed to comprehensively explore the various neuronal differentiation potentials of PDLSCs for application in neural regeneration therapy.Main text: PDLSCs have superior potential to differentiate into various neural-like cells through a dedifferentiation stage followed by differentiation process without need for cell division. Diverse combination of nutritional factors can be used to induce the PDLSCs toward neural lineage. PDLSCs when coupled with biomaterials could have significant implications for neural tissue repair. PDLSCs can be a new clinical research target for Alzheimer's disease treatment, multiple sclerosis and cerebral ischemia. Moreover, PDLSCs have beneficial effects on retinal ganglion cell regeneration and photoreceptor survival. PDLSCs can be a great source for the repair of injured peripheral nerve through the expression of several neural growth factors and differentiation into Schwann cells.Conclusion: In conclusion, these cells are an appealing source for utilizing in clinical treatment of the neuropathological disorders. Although significant in vitro and in vivo investigations were carried out in order for neural differentiation evaluation of these cells into diverse types of neurons, more preclinical and clinical studies are needed to elucidate their therapeutic potential for neural diseases.

1 May 2019 in Pharmacogenomics and Personalized Medicine
Verified
Journal Article
Open access
PDF file
SJShabnam Jeibouei
Shabnam Jeibouei
MAMohammad Esmael Akbari
Mohammad Esmael Akbari
AKAlireza Kalbasi
Alireza Kalbasi
AAAmir Reza Aref
Amir Reza Aref
MAMohammad Ajoudanian
Mohammad Ajoudanian
HZHakimeh Zali
Hakimeh Zali
Breast cancer is the fifth cause of cancer death among women worldwide and represents a global health concern due to the lack of effective therapeutic regimens that could be applied to all disease groups. Nowadays, strategies based on pharmacogenomics constitute novel approaches that minimize toxicity while maximizing drug efficacy; this being of high importance in the oncology setting. Besides, genetic profiling of malignant tumors can lead to the development of targeted therapies to be included in effective drug regimens. Advances in molecular diagnostics have revealed that breast cancer is a multifaceted disease, characterized by inter-tumoral and intra-tumoral heterogeneity and, unlike the past, molecular classifications based on the expression of individual biomarkers have led to devising novel therapeutic strategies that improve patient survival. In this review, we report and discuss the molecular classification of breast cancer subtypes, the heterogeneity resource, and the advantages and disadvantages of current drug regimens with consideration of pharmacogenomics in response and resistance to treatment.

3 March 2023 in Journal of Diabetes Research
Verified
Journal Article
Open access
PDF file
MGMahyar Ghaffari
Mahyar Ghaffari
SRSara Razi
Sara Razi
HZHamidreza Zalpoor
Hamidreza Zalpoor
MNMohsen Nabi-Afjadi
Mohsen Nabi-Afjadi
FMFariba Mohebichamkhorami
Fariba Mohebichamkhorami
HZHakimeh Zali
Hakimeh Zali
Most medical investigations have found a reduced blood level of miR-146a in type 2 diabetes (T2D) patients, suggesting an important role for miR-146a (microRNA-146a) in the etiology of diabetes mellitus (DM) and its consequences. Furthermore, injection of miR-146a mimic has been confirmed to alleviate diabetes mellitus in diabetic animal models. In this line, deregulation of miR-146a expression has been linked to the progression of nephropathy, neuropathy, wound healing, olfactory dysfunction, cardiovascular disorders, and retinopathy in diabetic patients. In this review, besides a comprehensive review of the function of miR-146a in DM, we discussed new findings on type 1 (T1MD) and type 2 (T2DM) diabetes mellitus, highlighting the discrepancies between clinical and preclinical investigations and elucidating the biological pathways regulated through miR-146a in DM-affected tissues.

27 April 2020 in Cancer Investigation
Verified
Journal Article
Closed access
AJAmeneh Jafari
Ameneh Jafari
MRMostafa Rezaei-Tavirani
Mostafa Rezaei-Tavirani
BFBehrouz Farhadihosseinabadi
Behrouz Farhadihosseinabadi
STShahrouz Taranejoo
Shahrouz Taranejoo
HZHakimeh Zali
Hakimeh Zali
Heat shock protein 90 (HSP90), a highly and unique chaperone, presents as a double-edged sword. It plays an essential role in many physiological and pathological processes, including tumor development. The current review highlights a recent understanding of the roles of HSP90 in molecular mechanisms underlying cancer survival and progression. HSP90 and its client proteins through the regulation of oncoproteins including signaling proteins, receptors and transcriptional factors involved in tumorigenesis. It also has potential clinical application as diagnostic and prognostic biomarkers for assessing cancer progression. In this way, using HSP90 to develop new anti-cancer therapeutic agents including HSP90 inhibitors, anti-HSP90 antibody, and HSP90-based vaccines has been promising.

28 June 2022 in Journal of Biomedical Materials Research Part A
Verified
Journal Article
Closed access
ZNZahra Niknam
Zahra Niknam
FHFaezeh Hosseinzadeh
Faezeh Hosseinzadeh
FSForough Shams
Forough Shams
LFLeyla Fath‐Bayati
Leyla Fath‐Bayati
GNGhader Nuoroozi
Ghader Nuoroozi
YRYousef Rasmi
Yousef Rasmi