Ozgur Ozmen

Dr. Ozgur Ozmen

orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 October 2022 in Journal of Biomedical Informatics
Verified
Journal Article
Open access
HNHaoran Niu
Haoran Niu
OOOlufemi Omitaomu
Olufemi Omitaomu
MLMichael Langston
Michael Langston
MOMohammad Olama
Mohammad Olama
OOOzgur Ozmen
Ozgur Ozmen
JNJonathan Nebeker
Jonathan Nebeker
Detecting anomalous sequences is an integral part of building and protecting modern large-scale health information technology (HIT) systems. These HIT systems generate a large volume of records of patients' state and significant events, which provide a valuable resource to help improve clinical decisions, patient care processes, and other issues. However, detecting anomalous sequences in electronic health records (EHR) remains a challenge in healthcare applications for several reasons, including imbalances in the data, complexity of relationships between events in the sequence, and the curse of dimensionality. Conventional anomaly detection methods use the finite sequence of events to discriminate sequences. They fail to incorporate salient event details under variable higher-order dependencies (e.g., duration between events) that can provide better discrimination of sequences in their models. To address this problem, we propose event sequence and subsequence anomaly detection algorithms that (1) use network-based representations of interactions in the data, (2) account for variable higher-order dependencies in the data, and (3) incorporate events duration for adequate discrimination of the data. The proposed approach identifies anomalies by monitoring the change in the graph after the test sequence is removed from the network. The change is quantified using graph distance metrics so that dramatic changes in the network can be attributed to the removed sequence. Furthermore, the proposed subsequence algorithm recommends plausible paths and salient information for the detected anomalous subsequences. Our results show that the proposed event sequence anomaly detection algorithm outperforms the baseline methods for both synthetic data and real-world EHR data.

19 November 2022 in SIMULATION
Verified
Journal Article
Closed access
JNJames Nutaro
James Nutaro
OOOzgur Ozmen
Ozgur Ozmen
When parallel algorithms for simulation were introduced in the 1970s, their development and use interested only experts in parallel computation. This circumstance changed as multi-core processors became commonplace, putting a parallel computer into the hands of every modeler. A natural outcome is growing interest in parallel simulation among persons not intimately familiar with parallel computing. At the same time, parallel simulation tools continue to be developed with the implicit assumption that the modeler is knowledgeable about parallel programming. The unintended consequence is a rapidly growing number of users of parallel simulation tools that are unlikely to recognize when the interaction of race conditions, partitioning strategies, and simultaneous action in their simulation models make results non-reproducible, thereby calling into question the validity of conclusions drawn from the simulation data. We illustrate the potential dangers of exposing parallel algorithms to users who are not experts in parallel computation with example models constructed using existing parallel simulation tools. By doing so, we hope to refocus tool developers on usability, even if this new focus incurs loss of some performance.

7 May 2019 in Health Systems
Verified
Journal Article
Closed access
OOOlufemi Omitaomu
Olufemi Omitaomu
OOOzgur Ozmen
Ozgur Ozmen
MOMohammed Olama
Mohammed Olama
LPLaura L. Pullum
Laura L. Pullum
TKTeja Kuruganti
Teja Kuruganti
JNJonathan R. Nebeker
Jonathan R. Nebeker
An increase in the reliability of Health Information Technology (HIT) will facilitate institutional trust and credibility of the systems. In this paper, we present an end-to-end framework for improving the reliability and performance of HIT systems. Specifically, we describe the system model, present some of the methods that drive the model, and discuss an initial implementation of two of the proposed methods using data from the Veterans Affairs HIT and Corporate Data Warehouse systems. The contributions of this paper, thus, include (1) the design of a system model for monitoring and detecting hazards in HIT systems, (2) a data-driven approach for analysing the health care data warehouse, (3) analytical methods for characterising and analysing failures in HIT systems, and (4) a tool architecture for generating and reporting hazards in HIT systems. Our goal is to work towards an automated system that will help identify opportunities for improvements in HIT systems.

28 May 2020 in Sustainability
Verified
Journal Article
Open access
PDF file
OOOzgur Ozmen
Ozgur Ozmen
JNJames Nutaro
James Nutaro
MSMichael Starke
Michael Starke
JMJeffrey Munk
Jeffrey Munk
LRLarry Roberts
Larry Roberts
HZHelia Zandi
Helia Zandi
To effectively engage demand-side and distributed energy resources (DERs) for dynamically maintaining the electric power balance, the challenges of controlling and coordinating building equipment and DERs on a large scale must be overcome. Although several control techniques have been proposed in the literature, a significant obstacle to applying these techniques in practice is having access to an effective testing platform. Performing tests at scale using real equipment is impractical, so simulation offers the only viable route to developmental testing at scales of practical interest. Existing power-grid testbeds are unable to model individual residential end-use devices for developing detailed control formulations for responsive loads and DERs. Furthermore, they cannot simulate the control and communications at subminute timescales. To address these issues, this paper presents a novel power-grid simulation testbed for transactive energy management systems. Detailed models of primary home appliances (e.g., heating and cooling systems, water heaters, photovoltaic panels, energy storage systems) are provided to simulate realistic load behaviors in response to environmental parameters and control commands. The proposed testbed incorporates software as it will be deployed, and enables deployable software to interact with various building equipment models for end-to-end performance evaluation at scale.

1 December 2021 in Journal of Biomedical Informatics
Verified
Journal Article
Open access
OOOlufemi Omitaomu
Olufemi Omitaomu
HKHilda B. Klasky
Hilda B. Klasky
MOMohammed Olama
Mohammed Olama
OOOzgur Ozmen
Ozgur Ozmen
LPLaura Pullum
Laura Pullum
JNJonathan R. Nebeker
Jonathan R. Nebeker
The adoption of health information technology (HIT) has facilitated efforts to increase the quality and efficiency of health care services and decrease health care overhead while simultaneously generating massive amounts of digital information stored in electronic health records (EHRs). However, due to patient safety issues resulting from the use of HIT systems, there is an emerging need to develop and implement hazard detection tools to identify and mitigate risks to patients. This paper presents a new methodological framework to develop hazard detection models and to demonstrate its capability by using the US Department of Veterans Affairs' (VA) Corporate Data Warehouse, the data repository for the VA's EHR. The overall purpose of the framework is to provide structure for research and communication about research results. One objective is to decrease the communication barriers between interdisciplinary research stakeholders and to provide structure for detecting hazards and risks to patient safety introduced by HIT systems through errors in the collection, transmission, use, and processing of data in the EHR, as well as potential programming or configuration errors in these HIT systems. A nine-stage framework was created, which comprises programs about feature extraction, detector development, and detector optimization, as well as a support environment for evaluating detector models. The framework forms the foundation for developing hazard detection tools and the foundation for adapting methods to particular HIT systems.

1 May 2019
Verified
Conference Paper
Open access
OOOzgur Ozmen
Ozgur Ozmen
HKHilda B. Klasky
Hilda B. Klasky
OOOlufemi Omitaomu
Olufemi Omitaomu
MOMohammed Olama
Mohammed Olama
TKTeja Kuruganti
Teja Kuruganti
JNJonathan Nebeker
Jonathan Nebeker
This paper presents an application of topic modeling on event sequences of Electronic Health Record (EHR) orders. Metaphorically, we approach clinical order event sequences of unlabeled data as if they are documents where words are the events that occurred in the history of an order. We demonstrate the approach leveraging Consult orders data. The details of the data preprocessing and the data structures are described along with the data sources. Latent Dirichlet Allocation (LDA) is leveraged to fit against the limited datasets prepared. Another open source tool - LDAvis is used for exploratory analysis of the LDA results. The preliminary results revealed some order patterns that are qualitatively evaluated as potential irregular transitions. The goal of this analysis is to provide unsupervised learning application to domain experts in the absence of labeled data where they can investigate captured patterns and identify irregular transitions of orders. Ultimately, such efforts will guide formalization of hazard detection algorithms that monitor EHR data to identify health information technology related hazards.