Keith Pardee

Keith Pardee


Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 August 2018 in Science Advances
Verified
Journal Article
Open access
PDF file
AHAlly Huang
Ally Huang
PNPeter Nguyen
Peter Nguyen
JSJessica C. Stark
Jessica C. Stark
MTMelissa K Takahashi
Melissa K Takahashi
NDNina Donghia
Nina Donghia
JCJames J. Collins
James J. Collins
We present a low-cost kit based on freeze-dried, cell-free reactions to illustrate synthetic and molecular biology concepts.

25 November 2019 in Nature Chemistry
Verified
Journal Article
Closed access
PDF file
PMPeivand Sadat Mousavi
Peivand Sadat Mousavi
SSSarah J. Smith
Sarah J. Smith
JCJenise B. Chen
Jenise B. Chen
MKMargot Karlikow
Margot Karlikow
ATAidan Tinafar
Aidan Tinafar
KPKeith Pardee
Keith Pardee

8 August 2019 in BMC Biology
Verified
Journal Article
Open access
PDF file
ATAidan Tinafar
Aidan Tinafar
KJKatariina Jaenes
Katariina Jaenes
KPKeith Pardee
Keith Pardee
Cell-free systems (CFS) have recently evolved into key platforms for synthetic biology applications. Many synthetic biology tools have traditionally relied on cell-based systems, and while their adoption has shown great progress, the constraints inherent to the use of cellular hosts have limited their reach and scope. Cell-free systems, which can be thought of as programmable liquids, have removed many of these complexities and have brought about exciting opportunities for rational design and manipulation of biological systems. Here we review how these simple and accessible enzymatic systems are poised to accelerate the rate of advancement in synthetic biology and, more broadly, biotechnology.

3 August 2018 in Science Advances
Verified
Journal Article
Open access
PDF file
JSJessica C. Stark
Jessica C. Stark
AHAlly Huang
Ally Huang
PNPeter Nguyen
Peter Nguyen
RDRachel S. Dubner
Rachel S. Dubner
KHKaren J. Hsu
Karen J. Hsu
MJMichael C. Jewett
Michael C. Jewett
We report portable, user-friendly reagents and equipment for visual, hands-on biology activities with supporting curriculum.

8 August 2022 in ACS Infectious Diseases
Verified
Journal Article
Open access
SSSeverino Jefferson Ribeiro da Silva
Severino Jefferson Ribeiro da Silva
JNJessica Catarine Frutuoso Do Nascimento
Jessica Catarine Frutuoso Do Nascimento
RMRenata Pessôa Germano Mendes
Renata Pessôa Germano Mendes
KGKlarissa Miranda Guarines
Klarissa Miranda Guarines
CSCaroline Targino Alves da Silva
Caroline Targino Alves da Silva
LPLindomar José Pena
Lindomar José Pena
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a highly transmissible and virulent human-infecting coronavirus that emerged in late December 2019 in Wuhan, China, causing a respiratory disease called coronavirus disease 2019 (COVID-19), which has massively impacted global public health and caused widespread disruption to daily life. The crisis caused by COVID-19 has mobilized scientists and public health authorities across the world to rapidly improve our knowledge about this devastating disease, shedding light on its management and control, and spawned the development of new countermeasures. Here we provide an overview of the state of the art of knowledge gained in the last 2 years about the virus and COVID-19, including its origin and natural reservoir hosts, viral etiology, epidemiology, modes of transmission, clinical manifestations, pathophysiology, diagnosis, treatment, prevention, emerging variants, and vaccines, highlighting important differences from previously known highly pathogenic coronaviruses. We also discuss selected key discoveries from each topic and underline the gaps of knowledge for future investigations.

23 December 2019 in Viruses
Verified
Journal Article
Open access
PDF file
SSSeverino Jefferson Ribeiro da Silva
Severino Jefferson Ribeiro da Silva
KPKeith Pardee
Keith Pardee
LPLindomar José Pena
Lindomar José Pena
The recent outbreak of Zika virus (ZIKV) in the Americas and its devastating developmental and neurological manifestations has prompted the development of field-based diagnostics that are rapid, reliable, handheld, specific, sensitive, and inexpensive. The gold standard molecular method for lab-based diagnosis of ZIKV, from either patient samples or insect vectors, is reverse transcription-quantitative polymerase chain reaction (RT-qPCR). The method, however, is costly and requires lab-based equipment and expertise, which severely limits its use as a point-of-care (POC) tool in resource-poor settings. Moreover, given the lack of antivirals or approved vaccines for ZIKV infection, a POC diagnostic test is urgently needed for the early detection of new outbreaks and to adequately manage patients. Loop-mediated isothermal amplification (LAMP) is a compelling alternative to RT-qPCR for ZIKV and other arboviruses. This low-cost molecular system can be freeze-dried for distribution and exhibits high specificity, sensitivity, and efficiency. A growing body of evidence suggests that LAMP assays can provide greater accessibility to much-needed diagnostics for ZIKV infections, especially in developing countries where the ZIKV is now endemic. This review summarizes the different LAMP methods that have been developed for the virus and summarizes their features, advantages, and limitations.