Synechocystis sp. PCC6803 is a cyanobacterium considered as a candidate photo-biological production platform - an attractive cell factory capable of using CO2 and light as carbon and energy source, respectively. In order to enable efficient use of metabolic potential of Synechocystis sp. PCC6803, it is of importance to develop tools for uncovering stoichiometric and regulatory principles in the Synechocystis metabolic network.

We demonstrate the existence of vortex soliton solutions in photonic crystal fibers. We analyze the role played by the photonic crystal fiber defect in the generation of optical vortices. An analytical prediction for the angular dependence of the amplitude and phase of the vortex solution based on group theory is also provided. Furthermore, all the analysis is performed in the non-paraxial regime.

We demonstrate the existence of spatial soliton solutions in photonic crystal fibers (PCF’s). These guided localized nonlinear waves appear as a result of the balance between the linear and nonlinear diffraction properties of the inhomogeneous photonic crystal cladding. The spatial soliton is realized self-consistently as the fundamental mode of the effective fiber defined simultaneously by the PCF linear and the self-induced nonlinear refractive indices. It is also shown that the photonic crystal cladding is able to stabilize these solutions, which would be unstable otherwise if the medium was entirely homogeneous.

Using group theory arguments and numerical simulations, we demonstrate the possibility of changing the vorticity or topological charge of an individual vortex by means of the action of a system possessing a discrete rotational symmetry of finite order. We establish on theoretical grounds a “transmutation pass rule” determining the conditions for this phenomenon to occur and numerically analyze it in the context of two-dimensional optical lattices. An analogous approach is applicable to the problems of Bose-Einstein condensates in periodic potentials.