Shahid Karim

Dr. Shahid Karim

orcid

Research Focus & Metrics

Academic Career Length

27Years (2000-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 December 2011 in PLOS ONE
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SKShahid Karim
Shahid Karim
PSParul Singh
Parul Singh
JRJosé M.C. Ribeiro
José M.C. Ribeiro
Saliva of blood sucking arthropods contains compounds that antagonize their hosts' hemostasis, which include platelet aggregation, vasoconstriction and blood clotting; saliva of these organisms also has anti-inflammatory and immunomodullatory properties. Perhaps because hosts mount an active immune response against these compounds, the diversity of these compounds is large even among related blood sucking species. Because of these properties, saliva helps blood feeding as well as help the establishment of pathogens that can be transmitted during blood feeding. We have obtained 1,626,969 reads by pyrosequencing a salivary gland cDNA library from adult females Amblyomma maculatum ticks at different times of feeding. Assembly of this data produced 72,441 sequences larger than 149 nucleotides from which 15,914 coding sequences were extracted. Of these, 5,353 had >75% coverage to their best match in the non-redundant database from the National Center for Biotechnology information, allowing for the deposition of 4,850 sequences to GenBank. The annotated data sets are available as hyperlinked spreadsheets. Putative secreted proteins were classified in 133 families, most of which have no known function. This data set of proteins constitutes a mining platform for novel pharmacologically active proteins and for uncovering vaccine targets against A. maculatum and the diseases they carry.

26 June 2017 in PLOS Neglected Tropical Diseases
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SKShahid Karim
Shahid Karim
KBKhemraj Budachetri
Khemraj Budachetri
NMNabanita Mukherjee
Nabanita Mukherjee
JWJaclyn Williams
Jaclyn Williams
AKAsma Kausar
Asma Kausar
ZIZafar Iqbal
Zafar Iqbal
As obligate blood-feeding arthropods, ticks transmit pathogens to humans and domestic animals more often than other arthropod vectors. Livestock farming plays a vital role in the rural economy of Pakistan, and tick infestation causes serious problems with it. However, research on tick species diversity and tick-borne pathogens has rarely been conducted in Pakistan. In this study, a systematic investigation of the tick species infesting livestock in different ecological regions of Pakistan was conducted to determine the microbiome and pathobiome diversity in the indigenous ticks. A total of 3,866 tick specimens were morphologically identified as 19 different tick species representing three important hard ticks, Rhipicephalus, Haemaphysalis and Hyalomma, and two soft ticks, Ornithodorus and Argas. The bacterial diversity across these tick species was assessed by bacterial 16S rRNA gene sequencing using a 454-sequencing platform on 10 of the different tick species infesting livestock. The notable genera detected include Ralstonia, Clostridium, Staphylococcus, Rickettsia, Lactococcus, Lactobacillus, Corynebacterium, Enterobacter, and Enterococcus. A survey of Spotted fever group rickettsia from 514 samples from the 13 different tick species generated rickettsial-specific amplicons in 10% (54) of total ticks tested. Only three tick species Rhipicephalus microplus, Hyalomma anatolicum, and H. dromedarii had evidence of infection with “Candidatus Rickettsia amblyommii” a result further verified using a rompB gene-specific quantitative PCR (qPCR) assay. The Hyalomma ticks also tested positive for the piroplasm, Theileria annulata, using a qPCR assay. This study provides information about tick diversity in Pakistan, and pathogenic bacteria in different tick species. Our results showed evidence for Candidatus R. amblyommii infection in Rhipicephalus microplus, H. anatolicum, and H. dromedarii ticks, which also carried T. annulata. Ticks are known for their negative impact on animal and human health through infestation and are capable of transmitting a wide range of pathogens including protozoan, viruses, and bacteria such as the spirochetes and rickettsiae. Ticks are widely distributed in different ecological, and geographical regions of Pakistan. Tick-borne diseases, such as bovine babesiosis and theileriosis have been reported in Pakistan. Crimean-Congo hemorrhagic fever (CCHF), a tick-borne viral disease in Pakistan, affects individuals who have close contact with livestock, including those working in slaughterhouses, veterinary practices, and hospitals. In Pakistan, CCHF is vectored by Hyalomma tick species, and therefore a significant threat could be posed to human health. However, there is a paucity of data on tick-borne zoonoses in Pakistan. In the current study, tick species infesting livestock across the Pakistan were catalogued, and molecular approaches were utilized to gain an insight into the microbiome associated with tick species. The results of our study revealed 19 tick species infesting livestock, and rich diversity of microbial communities associated with the ticks. Spotted Fever Group rickettsia, and Theileria annulata specific quantitative PCR assay confirmed the infection in Hyalomma tick species. To the best of our knowledge, this is the first detailed molecular study on tick species infesting livestock in Pakistan, and in depth vector competence studies should be conducted.

17 May 2019 in Frontiers in Immunology
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GCGary Crispell
Gary Crispell
SCScott P. Commins
Scott P. Commins
SAStephanie A. Archer-Hartman
Stephanie A. Archer-Hartman
SCShailesh Choudhary
Shailesh Choudhary
GDGuha Dharmarajan
Guha Dharmarajan
SKShahid Karim
Shahid Karim
Development of specific IgE antibodies to the oligosaccharide galactose-α-1, 3-galactose (α-gal) following tick bites has been shown to be the source of red meat allergy. In this study, we investigated the presence of α-gal in four tick species: the lone-star tick (Amblyomma americanum), the Gulf-Coast tick (Amblyomma maculatum), the American dog tick (Dermacentor variabilis), and the black-legged tick (Ixodes scapularis) by using a combination of immunoproteomic approach and, carbohydrate analysis. Anti-α-gal antibodies identified α-gal in the salivary glands of both Am. americanum and Ix. scapularis, while Am. maculatum and De. variabilis appeared to lack the carbohydrate. PNGase F treatment confirmed the deglycosylation of N-linked α-gal-containing proteins in tick salivary glands. Immunolocalization of α-gal moieties to the salivary secretory vesicles of the salivary acini also confirmed the secretory nature of α-gal-containing antigens in ticks. Am. americanum ticks were fed on human blood (lacks α-gal) using a silicone membrane system to determine the source of the α-gal. N-linked glycan analysis revealed that Am. americanum and Ix. scapularis have α-gal in their saliva and salivary glands, but Am. maculatum contains no detectable quantity. Consistent with the glycan analysis, salivary samples from Am. americanum and Ix. scapularis stimulated activation of basophils primed with plasma from α-gal allergic subjects. Together, these data support the idea that bites from certain tick species may specifically create a risk for the development of α-gal-specific IgE and hypersensitivity reactions in humans. Alpha-Gal syndrome challenges the current food allergy paradigm and broadens opportunities for future research.

1 January 2014 in Journal of Medical Entomology
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KBKhemraj Budachetri
Khemraj Budachetri
RBRebecca E. Browning
Rebecca E. Browning
SASteven W. Adamson
Steven W. Adamson
SDScot Dowd
Scot Dowd
CCChien-Chung Chao
Chien-Chung Chao
SKShahid Karim
Shahid Karim
The aim of this study was to survey the bacterial diversity of Amblyomma maculatum Koch, 1844, and characterize its infection with Rickettsia parkeri.

1 July 2015 in PLOS ONE
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SKShahid Karim
Shahid Karim
JRJosé M.C. Ribeiro
José M.C. Ribeiro
Hard ticks feed for several days or weeks on their hosts. Blood feeding is assisted by tick saliva, which is injected in the host skin regularly, alternating with blood ingestion. Tick saliva contains hundreds or thousands of different peptides and other bioactive compounds that assist feeding by inhibiting their hosts’ blood clotting, platelet aggregation, vasoconstriction, as well as pain and itching. Immunomodulatory and antimicrobial peptides are also found in tick saliva. Molecular characterization of tick salivary compounds, or its sialome (from the Greek sialos = saliva), helps identification of possible antigens that might confer anti-tick immunity, as well as identifying novel pharmacologically active compounds. Amblyomma americanum is a major nuisance tick in Eastern and Southern US, being a vector of Theileria and Ehrlichia bacteria to animals and humans. Presently we report an RNAseq study concerning the salivary glands of adult female A. americanum ticks, which involved sequencing of four libraries collected at different times of feeding. A total of 5,792 coding sequences were deduced from the transcriptome assembly, 3,139 of which were publicly deposited, expanding from the previously available 146 salivary sequences found in GenBank. A remarkable time-dependent transcript expression was found, mostly related to secretory products, supporting the idea that ticks may have several “sialomes” that are expressed at different times during feeding. The molecular nature of this sialome switching remains unknown. The hyperlinked spreadsheet containing the deduced coding sequences can be found at http://exon.niaid.nih.gov/transcriptome/Amb_americanum/Ambame-web.xlsx.

1 March 2016 in Trends in Parasitology
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Journal Article
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JCJindřich Chmelař
Jindřich Chmelař
JKJan Kotál
Jan Kotál
SKShahid Karim
Shahid Karim
PKPetr Kopacek
Petr Kopacek
IFIvo M.B. Francischetti
Ivo M.B. Francischetti
Michail KotsyfakisMichail Kotsyfakis
Michail Kotsyfakis