Virender Singh

Dr. Virender Singh

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Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 January 2014 in Scientific Reports
Verified
Journal Article
Open access
VSVirender Singh
Virender Singh
RRRatan Kumar Rai
Ratan Kumar Rai
AAAshish Arora
Ashish Arora
NSNeeraj Sinha
Neeraj Sinha
ATAshwani Kumar Thakur
Ashwani Kumar Thakur
Self-assembly of phenylalanine is linked to amyloid formation toxicity in phenylketonuria disease. We are demonstrating that L-phenylalanine self-assembles to amyloid fibrils at varying experimental conditions and transforms to a gel state at saturated concentration. Biophysical methods including nuclear magnetic resonance, resistance by alpha-phenylglycine to fibril formation and preference of protected phenylalanine to self-assemble show that this behaviour of L-phenylalanine is governed mainly by hydrophobic interactions. Interestingly, D-phenylalanine arrests the fibre formation by L-phenylalanine and gives rise to flakes. These flakes do not propagate further and prevent fibre formation by L-phenylalanine. This suggests the use of D-phenylalanine as modulator of L-phenylalanine amyloid formation and may qualify as a therapeutic molecule in phenylketonuria.

30 March 2020 in Journal of Biological Chemistry
Verified
Journal Article
Open access
VSVirender Singh
Virender Singh
LXLing Xu
Ling Xu
SBSolomiia Boyko
Solomiia Boyko
KSKrystyna Surewicz
Krystyna Surewicz
WSWitold K. Surewicz
Witold K. Surewicz
Tau is a microtubule-associated protein that plays a major role in Alzheimer's disease (AD) and other tauopathies. Recent reports indicate that, in the presence of crowding agents, tau can undergo liquid-liquid phase separation (LLPS), forming highly dynamic liquid droplets. Here, using recombinantly expressed proteins, turbidimetry, fluorescence microscopy imaging, and fluorescence recovery after photobleaching (FRAP) assays, we show that the divalent transition metal zinc strongly promotes this process, shifting the equilibrium phase boundary to lower protein or crowding agent concentrations. We observed no tau LLPS-promoting effect for any other divalent transition metal ions tested, including Mn2+, Fe2+, Co2+, Ni2+, and Cu2+ We also demonstrate that multiple zinc-binding sites on tau are involved in the LLPS-promoting effect and provide insights into the mechanism of this process. Zinc concentration is highly elevated in AD brains, and this metal ion is believed to be an important player in the pathogenesis of this disease. Thus, the present findings bring a new dimension to understanding the relationship between zinc homeostasis and the pathogenic process in AD and related neurodegenerative disorders.

26 May 2015 in Soft Matter
Verified
Journal Article
Closed access
PDF file
VSVirender Singh
Virender Singh
KSKirti Snigdha
Kirti Snigdha
CSChandan Singh
Chandan Singh
NSNeeraj Sinha
Neeraj Sinha
ATAshwani Kumar Thakur
Ashwani Kumar Thakur
Multiple factors that dictate the formation of a new polymorphic form of Fmoc–phenylalanine hydrogel.

24 February 2018 in Soft Matter
Verified
Journal Article
Closed access
PDF file
AGAvinash Y. Gahane
Avinash Y. Gahane
PRPritish Ranjan
Pritish Ranjan
VSVirender Singh
Virender Singh
RSRaj K. Sharma
Raj K. Sharma
NSNeeraj Sinha
Neeraj Sinha
ATAshwani K. Thakur
Ashwani K. Thakur
In the quest for new antimicrobial materials, hydrogels of Fmoc-protected peptides and amino acids have gained momentum due to their ease of synthesis and cost effectiveness; however, their repertoire is currently limited, and the mechanistic details of their function are not well understood. Herein, we report the antibacterial activity of the hydrogel and solution phases of Fmoc-phenylalanine (Fmoc-F) against a variety of Gram-positive bacteria including methicillin-resistant Staphylococcus aureus (MRSA). Fmoc-F, a small molecule hydrogelator, reduces the bacterial load both in vitro and in the skin wound infections of mice. The antibacterial activity of Fmoc-F is predominantly due to its release from the hydrogel. Fmoc-F shows surfactant-like properties with critical micelle concentration nearly equivalent to its minimum bactericidal concentration. Similar to Fmoc-F, some Fmoc-conjugated amino acids (Fmoc-AA) have also shown antibacterial effects that are linearly correlated with their surfactant properties. At low concentrations, where Fmoc-F does not form micelles, it inhibits bacterial growth by entering the cell and reducing the glutathione levels. However, at higher concentrations, Fmoc-F triggers oxidative and osmotic stress and, alters the membrane permeabilization and integrity, which kills Gram-positive bacteria. Herein, we proposed the use of the Fmoc-F hydrogel and its solution for several biomedical applications. This study will open up new avenues to enhance the repertoire of Fmoc-AA to act as antimicrobial agents and improve their structure–activity relationship.

12 February 2024 in Nature Chemical Biology
Verified
Journal Article
Open access
PDF file
ABAaron T. Balana
Aaron T. Balana
AMAnne-Laure Mahul-Mellier
Anne-Laure Mahul-Mellier
BNBinh A. Nguyen
Binh A. Nguyen
MHMian Horvath
Mian Horvath
AJAfraah Javed
Afraah Javed
MPMatthew Pratt
Matthew Pratt
Amyloid-forming proteins such α-synuclein and tau, which are implicated in Alzheimer’s and Parkinson’s disease, can form different fibril structures or strains with distinct toxic properties, seeding activities and pathology. Understanding the determinants contributing to the formation of different amyloid features could open new avenues for developing disease-specific diagnostics and therapies. Here we report that O-GlcNAc modification of α-synuclein monomers results in the formation of amyloid fibril with distinct core structure, as revealed by cryogenic electron microscopy, and diminished seeding activity in seeding-based neuronal and rodent models of Parkinson’s disease. Although the mechanisms underpinning the seeding neutralization activity of the O-GlcNAc-modified fibrils remain unclear, our in vitro mechanistic studies indicate that heat shock proteins interactions with O-GlcNAc fibril inhibit their seeding activity, suggesting that the O-GlcNAc modification may alter the interactome of the α-synuclein fibrils in ways that lead to reduce seeding activity in vivo. Our results show that posttranslational modifications, such as O-GlcNAc modification, of α-synuclein are key determinants of α-synuclein amyloid strains and pathogenicity.

17 January 2024 in Nature Communications
Verified
Journal Article
Open access
PDF file
BNBinh An Nguyen
Binh An Nguyen
VSVirender Singh
Virender Singh
SAShumaila Afrin
Shumaila Afrin
AYAnna Yakubovska
Anna Yakubovska
LWLanie Wang
Lanie Wang
LSLorena Saelices
Lorena Saelices
ATTR amyloidosis is caused by the deposition of transthyretin in the form of amyloid fibrils in virtually every organ of the body, including the heart. This systemic deposition leads to a phenotypic variability that has not been molecularly explained yet. In brain amyloid conditions, previous studies suggest an association between clinical phenotype and the molecular structures of their amyloid fibrils. Here we investigate whether there is such an association in ATTRv amyloidosis patients carrying the mutation I84S. Using cryo-electron microscopy, we determined the structures of cardiac fibrils extracted from three ATTR amyloidosis patients carrying the ATTRv-I84S mutation, associated with a consistent clinical phenotype. We found that in each ATTRv-I84S patient, the cardiac fibrils exhibited different local conformations, and these variations can co-exist within the same fibril. Our finding suggests that one amyloid disease may associate with multiple fibril structures in systemic amyloidoses, calling for further studies.