Eylem Kulkoyluoglu Cotul

Dr. Eylem Kulkoyluoglu Cotul

PhD | Department of Medicinal Chemistry and Molecular Pharmacology | Purdue University
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Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2019 in Trends in Endocrinology & Metabolism
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Journal Article
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Eylem Kulkoyluoglu CotulEylem Kulkoyluoglu Cotul
Eylem Kulkoyluoglu Cotul
AAAlexandra Arca
Alexandra Arca
ZMZeynep Madak-Erdogan
Zeynep Madak-Erdogan

15 May 2019 in Cancer Research
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Journal Article
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ZMZeynep Madak-Erdogan
Zeynep Madak-Erdogan
SBShoham Band
Shoham Band
YZYiru Chen Zhao
Yiru Chen Zhao
Brandi SmithBrandi Smith
Brandi Smith
Eylem Kulkoyluoglu CotulEylem Kulkoyluoglu Cotul
Eylem Kulkoyluoglu Cotul
JFJodi A. Flaws
Jodi A. Flaws
Obesity is a risk factor for postmenopausal estrogen receptor alpha (ERα)-positive (ER+) breast cancer. Molecular mechanisms underlying factors from plasma that contribute to this risk and how these mechanisms affect ERα signaling have yet to be elucidated. To identify such mechanisms, we performed whole metabolite and protein profiling in plasma samples from women at high risk for breast cancer, which led us to focus on factors that were differentially present in plasma of obese versus nonobese postmenopausal women. These studies, combined with in vitro assays, identified free fatty acids (FFA) as circulating plasma factors that correlated with increased proliferation and aggressiveness in ER+ breast cancer cells. FFAs activated both the ERα and mTOR pathways and rewired metabolism in breast cancer cells. Pathway preferential estrogen-1 (PaPE-1), which targets ERα and mTOR signaling, was able to block changes induced by FFA and was more effective in the presence of FFA. Collectively, these data suggest a role for obesity-associated gene and metabolic rewiring in providing new targetable vulnerabilities for ER+ breast cancer in postmenopausal women. Furthermore, they provide a basis for preclinical and clinical trials where the impact of agents that target ERα and mTOR signaling cross-talk would be tested to prevent ER+ breast cancers in obese postmenopausal women.Significance: These findings show that obesity-associated changes in certain blood metabolites rewire metabolic programs in cancer cells, influence mammary epithelial cell tumorigenicity and aggressiveness, and increase breast cancer risk.


8 May 2020 in The FEBS Journal
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SKSibel Cal Kayitmazbatir
Sibel Cal Kayitmazbatir
Eylem Kulkoyluoglu CotulEylem Kulkoyluoglu Cotul
Eylem Kulkoyluoglu Cotul
JGJacqueline Growe
Jacqueline Growe
CSChristopher P. Selby
Christopher P. Selby
SRSeth D. Rhoades
Seth D. Rhoades
İKİbrahim Kavakli
İbrahim Kavakli
Circadian disruption influences metabolic health. Metabolism modulates circadian function. However, the mechanisms coupling circadian rhythms and metabolism remain poorly understood. Here, we report that cystathionine β‐synthase (CBS), a central enzyme in one‐carbon metabolism, functionally interacts with the core circadian protein cryptochrome 1 (CRY1). In cells, CBS augments CRY1‐mediated repression of the CLOCK/BMAL1 complex and shortens circadian period. Notably, we find that mutant CBS‐I278T protein, the most common cause of homocystinuria, does not bind CRY1 or regulate its repressor activity. Transgenic CbsZn/Zn mice, while maintaining circadian locomotor activity period, exhibit reduced circadian power and increased expression of E‐BOX outputs. CBS function is reciprocally influenced by CRY1 binding. CRY1 modulates enzymatic activity of the CBS. Liver extracts from Cry1−/− mice show reduced CBS activity that normalizes after the addition of exogenous wild‐type (WT) CRY1. Metabolomic analysis of WT, CbsZn/Zn, Cry1−/−, and Cry2−/− samples highlights the metabolic importance of endogenous CRY1. We observed temporal variation in one‐carbon and transsulfuration pathways attributable to CRY1‐induced CBS activation. CBS‐CRY1 binding provides a post‐translational switch to modulate cellular circadian physiology and metabolic control.

8 March 2022 in Molecular Cancer Research
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QZQianying Zuo
Qianying Zuo
AMAyca Nazli Mogol
Ayca Nazli Mogol
YLYu-Jeh Liu
Yu-Jeh Liu
ACAshlie Santaliz Casiano
Ashlie Santaliz Casiano
CCChristine Chien
Christine Chien
ZMZeynep Madak-Erdogan
Zeynep Madak-Erdogan
Estrogen receptor–positive (ER+) metastatic tumors contribute to nearly 70% of breast cancer–related deaths. Most patients with ER+ metastatic breast cancer (MBC) undergo treatment with the estrogen receptor antagonist fulvestrant as standard of care. Yet, among such patients, metastasis in liver is associated with reduced overall survival compared with other metastasis sites. The factors underlying the reduced responsiveness of liver metastases to ER-targeting agents remain unknown, impeding the development of more effective treatment approaches to improve outcomes for patients with ER+ liver metastases. We therefore evaluated site-specific changes in MBC cells and determined the mechanisms through which the liver metastatic niche specifically influences ER+ tumor metabolism and drug resistance. We characterized ER activity of MBC cells both in vitro, using a novel system of tissue-specific extracellular matrix hydrogels representing the stroma of ER+ tumor metastatic sites (liver, lung, and bone), and in vivo, in liver and lung metastasis mouse models. ER+ metastatic liver tumors and MBC cells grown in liver hydrogels displayed upregulated expression of glucose metabolism enzymes in response to fulvestrant. Furthermore, differential ER± activity, but not expression, was detected in liver hydrogels. In vivo, increased glucose metabolism led to increased glycogen deposition in liver metastatic tumors, while a fasting-mimicking diet increased efficacy of fulvestrant treatment to reduce the metastatic burden. Our findings identify a novel mechanism of endocrine resistance driven by the liver tumor microenvironment. Implications: These results may guide the development of dietary strategies to circumvent drug resistance in liver metastasis, with potential applicability in other metastatic diseases. Watch the interview with Zeynep Madak-Erdogan, PhD, recipient of the 2024 MCR Michael B. Kastan Award for Research Excellence: https://vimeo.com/992993791

24 August 2020 in Cancers
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Journal Article
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Eylem Kulkoyluoglu CotulEylem Kulkoyluoglu Cotul
Eylem Kulkoyluoglu Cotul
QZQIANYING ZUO
QIANYING ZUO
ACAshlie Santaliz Casiano
Ashlie Santaliz Casiano
OIOzan Imir
Ozan Imir
Ayca MogolAyca Mogol
Ayca Mogol
ZMZeynep Madak-Erdogan
Zeynep Madak-Erdogan
The majority of breast cancer specific deaths in women with estrogen receptor positive (ER+) tumors occur due to metastases that are resistant to therapy. There is a critical need for novel therapeutic approaches to achieve tumor regression and/or maintain therapy responsiveness in metastatic ER+ tumors. The objective of this study was to elucidate the role of metabolic pathways that undermine therapy efficacy in ER+ breast cancers. Our previous studies identified Exportin 1 (XPO1), a nuclear export protein, as an important player in endocrine resistance progression and showed that combining selinexor (SEL), an FDA-approved XPO1 antagonist, synergized with endocrine agents and provided sustained tumor regression. In the current study, using a combination of transcriptomics, metabolomics and metabolic flux experiments, we identified certain mitochondrial pathways to be upregulated during endocrine resistance. When endocrine resistant cells were treated with single agents in media conditions that mimic a nutrient deprived tumor microenvironment, their glutamine dependence for continuation of mitochondrial respiration increased. The effect of glutamine was dependent on conversion of the glutamine to glutamate, and generation of NAD+. PGC1α, a key regulator of metabolism, was the main driver of the rewired metabolic phenotype. Remodeling metabolic pathways to regenerate new vulnerabilities in endocrine resistant breast tumors is novel, and our findings reveal a critical role that ERα-XPO1 crosstalk plays in reducing cancer recurrences. Combining SEL with current therapies used in clinical management of ER+ metastatic breast cancer shows promise for treating and keeping these cancers responsive to therapies in already metastasized patients.