Zhenning Liu

Prof. Zhenning Liu


Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 October 2021 in Plant Physiology and Biochemistry
Verified
Journal Article
Closed access
MXmeng xu
meng xu
HLHui Li
Hui Li
ZLZhenning Liu
Zhenning Liu
XWXiao-Hua Wang
Xiao-Hua Wang
PXPing Xu
Ping Xu
XCxiaoyu Cui
xiaoyu Cui

Verified
Journal Article
Open access
PDF file
RHRuxue Huo
Ruxue Huo
ZLZhenning Liu
Zhenning Liu
Xiaolin YuXiaolin Yu
Xiaolin Yu
ZLZongyun Li
Zongyun Li
Two-component systems (TCS) in plants have evolved into a more complicated multi-step phosphorelay (MSP) pathway, which employs histidine kinases (HKs), histidine-containing phosphotransfer proteins (HPts), and response regulators (RRs) to regulate various aspects of plant growth and development. How plants perceive the external signals, then integrate and transduce the secondary signals specifically to the desired destination, is a fundamental characteristic of the MSP signaling network. The TCS elements involved in the MSP pathway and molecular mechanisms of signal transduction have been best understood in the model plant Arabidopsis thaliana. In this review, we focus on updated knowledge on TCS signal transduction in Arabidopsis. We first present a brief description of the TCS elements; then, the protein–protein interaction network is established. Finally, we discuss the possible molecular mechanisms involved in the specificity of the MSP signaling at the mRNA and protein levels.

24 May 2022 in Plant Physiology and Biochemistry
Verified
Journal Article
Closed access
HLHui Li
Hui Li
XWXiao-Hua Wang
Xiao-Hua Wang
QLQiang Li
Qiang Li
PXPing Xu
Ping Xu
ZLZhenning Liu
Zhenning Liu
XCxiaoyu Cui
xiaoyu Cui

12 January 2023 in Frontiers in Plant Science
Verified
Journal Article
Open access
RHRuxue Huo
Ruxue Huo
YZYanshu Zhao
Yanshu Zhao
TLTianxu Liu
Tianxu Liu
MXMeng Xu
Meng Xu
XWXiaohua Wang
Xiaohua Wang
ZLZongyun Li
Zongyun Li
Two-component system (TCS), which comprises histidine kinases (HKs), histidine phosphotransfer proteins (HPs), and response regulators (RRs), plays essential roles in regulating plant growth, development, and response to various environmental stimuli. TCS genes have been comprehensively identified in various plants, while studies on the genome-wide identification and analysis of TCS in sweet potato were still not reported. Therefore, in this study, a total of 90 TCS members consisting of 20 HK(L)s, 11 HPs, and 59 RRs were identified in the genome of Ipomoea batatas. Furthermore, their gene structures, conserved domains, and phylogenetic relationships were analyzed in detail. Additionally, the gene expression profiles in various organs were analyzed, and response patterns to adverse environmental stresses were investigated. The results showed that these 90 TCS genes were mapped on 15 chromosomes with a notably uneven distribution, and the expansion of TCS genes in sweet potato was attributed to both segmental and tandem duplications. The majority of the TCS genes showed distinct organ-specific expression profiles, especially in three types of roots (stem roots, fibrous roots, tuberous roots). Moreover, most of the TCS genes were either induced or suppressed upon treatment with abiotic stresses (drought, salinity, cold, heat) and exogenous phytohormone abscisic acid (ABA). In addition, the yeast-two hybrid system was used to reveal the HK-HP-RR protein-protein interactions. IbHP1, IbHP2, IbHP4, and IbHP5 could interact with three HKs (IbHK1a, IbHK1b, and IbHK5), and also interact with majority of the type-B RRs (IbRR20–IbRR28), while no interaction affinity was detected for IbHP3. Our systematic analyses could provide insights into the characterization of the TCS genes, and further the development of functional studies in sweet potato.

3 October 2018 in BMC Genomics
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Journal Article
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LKLijun Kong
Lijun Kong
KZKun Zhao
Kun Zhao
YGYingying Gao
Yingying Gao
LMLiming Miao
Liming Miao
CCChaoquan Chen
Chaoquan Chen
Xiaolin YuXiaolin Yu
Xiaolin Yu
Cytokinin is a classical phytohormone that plays important roles in numerous plant growth and development processes. In plants, cytokinin signals are transduced by a two-component system, which involves many genes, including cytokinin response factors (CRFs). Although CRFs take vital part in the growth of Arabidopsis thaliana and Solanum lycopersicum, little information of the CRFs in the Brassica U-triangle species has been known yet. We identified and compared 141 CRFs in the diploids and amphidiploids of Brassica species, including B. rapa, B. oleracea, B. nigra, B. napus, and B. juncea. For all the 141 CRFs, the sequence and structure analysis, physiological and biochemical characteristics analysis were performed. Meanwhile, the Ka/Ks ratios of orthologous and paralogous gene pairs were calculated, which indicated the natural selective pressure upon the overall length or a certain part of the CRFs. The expression profiles of CRFs in different tissues and under various stresses were analyzed in B. oleracea, B. nigra, and B. napus. The similarities and differences in gene sequences and expression profiles among the homologous genes of these species were discussed. In addition, AtCRF11 and its ortholog BrCRF11a were identified to be related to primary root growth in Arabidopsis. This study performed a genome-wide comparative analysis of the CRFs in the diploids and amphidiploids of the Brassica U-triangle species. Many similarities and differences in gene sequences and expression profiles existed among the CRF homologous genes of these species. In the bioinformatics analysis, we found the close relativity of the CRF homologous genes in the Brassica A and C genomes and the distinctiveness of those in the B genome, and the CRF homologous genes in B subgenome were considerably influenced by the A subgenome of B. juncea. In addition, we identified a new function of the Clade V CRFs related to root growth, which also clarified the functional conservation between Arabidopsis and B. rapa. These results not only offer useful information on the functional analysis of CRFs but also provide new insights into the evolution of Brassica species.

4 December 2020 in Plant Breeding
Verified
Journal Article
Open access
PDF file
PXPing Xu
Ping Xu
XWXiaohua Wang
Xiaohua Wang
SDShengjie Dai
Shengjie Dai
XCXiaoyu Cui
Xiaoyu Cui
XCXue Cao
Xue Cao
JSJinxiong Shen
Jinxiong Shen
The multilocular trait is generally considered as a desirable agricultural trait for the high‐yield breeding of Brassica crops and has attracted considerable attention. The siliques of multilocular plants contain more chambers and seeds than those of bilocular rapeseed varieties and, thus, have a higher yield. Furthermore, multilocular plants are precious germplasm resources for the breeding of Brassica crops. In this article, we provide a summary of researches regarding the multilocular trait in rapeseed, including its natural germplasms, silique morphology, genetic models, and regulatory mechanisms. The study will highlight the potential of multilocular rapeseed for high‐yield breeding.