Seagrass meadows support key ecosystem services, via provision of food directly for herbivores, and indirectly to their predators. The importance of herbivores in seagrass meadows has been well-documented, but the links between food webs and ecosystem services in seagrass meadows have not previously been made explicit. Herbivores interact with ecosystem services – including carbon sequestration, cultural values, and coastal protection. Interactions can be positive or negative and depend on a range of factors including the herbivore identity and the grazing type and intensity. There can be unintended consequences from management actions based on a poor understanding of trade-offs that occur with complex seagrass-herbivore interactions. Tropical seagrass meadows support a diversity of grazers spanning the meso-, macro-, and megaherbivore scales. We present a conceptual model to describe how multiple ecosystem services are influenced by herbivore pressure in tropical seagrass meadows. Our model suggests that a balanced ecosystem, incorporating both seagrass and herbivore diversity, is likely to sustain the broadest range of ecosystem services. Our framework suggests the pathway to achieve desired ecosystem services outcomes requires knowledge on four key areas: (1) how size classes of herbivores interact to structure seagrass; (2) desired community and management values; (3) seagrass responses to top–down and bottom–up controls; (4) the pathway from intermediate to final ecosystem services and human benefits. We suggest research should be directed to these areas. Herbivory is a major structuring influence in tropical seagrass systems and needs to be considered for effective management of these critical habitats and their services.

Efficacious monitoring of fish stocks is critical for efficient management. Multibeam acoustic cameras, that use sound-reflectance to generate moving pictures, provide an important alternative to traditional video-based methods that are inoperable in turbid waters. However, acoustic cameras, like standard video monitoring methods, produce large volumes of imagery from which it is time consuming and costly to extract data manually. Deep learning, a form of machine learning, can be used to automate the processing and analysis of acoustic data. We used convolutional neural networks (CNNs) to detect and count fish in a publicly available dual-frequency identification sonar (DIDSON) dataset. We compared three types of detections, direct acoustic, acoustic shadows, and a combination of direct and shadows. The deep learning model was highly reliable at detecting fish to obtain abundance data using acoustic data. Model accuracy for counts-per-image was improved by the inclusion of shadows (F1 scores, a measure of the model accuracy: direct 0.79, shadow 0.88, combined 0.90). Model accuracy for MaxN per video was high for all three types of detections (F1 scores: direct 0.90, shadow 0.90, combined 0.91). Our results demonstrate that CNNs are a powerful tool for automating underwater acoustic data analysis. Given this promise, we suggest broadening the scope of testing to include a wider range of fish shapes, sizes, and abundances, with a view to automating species (or ‘morphospecies’) identification and counts.

Structural habitat complexity is a fundamental attribute influencing ecological food webs. Simplification of complex habitats occurs due to both natural and anthropogenic pressures that can alter productivity of food webs. Relationships between food web structure and habitat complexity may be influenced by multiple mechanisms, and untangling these can be challenging. We investigated whether (1) size spectra vary across a gradient of habitat complexity in seagrass meadows and (2) structural complexity changes the importance of different primary producers supporting the food web (determined using stable isotope analysis) in the Great Barrier Reef World Heritage Area. We found that moderately complex meadows had much steeper size spectra slopes, caused by a higher abundance of smaller animals and fewer larger animals, while meadows on either end of the complexity scale (low and a single meadow with very high complexity) had shallower slopes, indicative of a more balanced distribution of animal sizes across the spectrum. We also found that the importance of epiphytic algae as a food source was high in most meadows, despite the increase in seagrass surface area on which epiphytes could grow. The consistent importance of epiphytic algae suggests that the changes in the availability of different potential food sources did not affect food web structure. Our findings indicate that food web structure may change with variations in structural complexity because of changes in the abundance of smaller and/or larger animals. Food web structure and food sources are important determinants of the dynamic stability of food webs. Size spectra analysis is already used as a monitoring tool for assessing populations of key fisheries species in commercial fishing operations, and thus, we recommend using size spectra as a proxy for assessing the structure of the food webs in different types of seagrass meadows. Size spectra may be a useful indicator of how different meadows provide for ecosystem services such as fisheries.

Shellfish reefs across the world have been heavily degraded by mechanical harvesting, disease and declining water quality. In southern Australia, where substantial losses have occurred, government and non‐government efforts to restore functioning reefs are now underway with a strong focus on enhancing fish productivity. However, the capacity of these restored reefs to enhance fish production remains unknown, hampering estimates of return on investment. We quantify the density differences of newly recruited juvenile fish and other nekton on these restored reefs, relative to those on unrestored, unstructured habitat. Fish were surveyed at three paired reef‐unstructured locations using 169 unbaited stereo video deployments during three periods over 12 months (2022–2023). We used automation software, FishID, to automatically identify, size and count fish in videos. We subsequently applied known growth and mortality parameters to model enhancement of fish productivity. Sixteen species occurred as new recruits, with all but two found at higher densities on reefs than unstructured habitat. Enhancement of fish production from subtidal restored shellfish reefs from a single year's cohort is estimated to be, on average, 6186 kg ha⁻¹ year⁻¹ (SD 1802) after enough time has elapsed for all species to have matured. Species harvested commercially or recreationally contributed 98% of that production (6083 kg ha⁻¹ year⁻¹, SD 1797). Enhancement varied greatly among locations, ranging from 12,738 kg ha⁻¹ year⁻¹ (SD 2894), which is the highest yet recorded anywhere, to 1.4 kg ha⁻¹ year⁻¹ (SD 0.9). The lack of juvenile fish at the location with the lowest estimated enhancement might be explained by the impact of overfishing on recruitment of key species or by an abundance of alternative habitat for juvenile fish. Synthesis and applications. The combination of underwater videos with automated data extraction provides a reliable, cost‐effective method for surveying fish on oyster reefs. By quantifying enhanced fish productivity on reefs, we provide estimates that will underpin calculations of ecological, social and financial benefits, supporting the business case for scaling‐up restoration efforts.

Seagrass meadows are an important habitat for a variety of animals, including ecologically and socioeconomically important species. Seagrass meadows are recognised as providing species with nursery grounds, and as a migratory pathway to adjacent habitats. Despite their recognised importance, little is known about the species assemblages that occupy seagrass meadows of different depths in the coastal zone. Understanding differences in the distribution of species in seagrass at different depths, and differences in species diversity, abundance, biomass, and size spectra, is important to fully appreciate both the ecological significance and economic importance of these seagrass meadows. Here, we assess differences in the assemblage characteristics of fish, crustacea, and cephalopods (collectively, nekton) between deep (>9 m; Halophila spinulosa dominant) and shallow water (<2 m; Halodule uninervis and/or Zostera muelleri dominant) seagrass meadows of the central Great Barrier Reef coast of Queensland, Australia. Nekton assemblage structure differed between deep and shallow seagrass. Deeper meadows were typified by juvenile emperors (e.g., Lethrinus genivittatus), hairfinned leatherjacket (Paramonacanthus japonicus) and rabbitfish (e.g., Siganus fuscescens) in both biomass per unit effort (BPUE) and catch per unit effort (CPUE), whereas shallow meadows were typified by the green tiger prawn (Penaeus semisulcatus) and pugnose ponyfish (Secutor insidiator) in both BPUE and CPUE. Both meadow depths were distinct in their nekton assemblage, particularly for socioeconomically important species, with 11 species unique to both shallow and deep meadows. However, both meadow depths also included juveniles of socioeconomically important species found in adjacent habitats as adults. The total nekton CPUE was not different between deep and shallow seagrass, but the BPUE and body mass of individual animals were greater in deep than shallow seagrass. Size spectra analysis indicated that in both deep and shallow meadows, smaller animals predominated, even more so than theoretically expected for size spectra. Our findings highlight the unique attributes of both shallow and deeper water seagrass meadows, and identify the distinct and critically important role of deep seagrass meadows within the Great Barrier Reef World Heritage Area (GBRWHA) as a habitat for small and juvenile species, including those of local fisheries value.