Saurabh Gautam

Dr. Saurabh Gautam

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Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 February 2023 in Nature Communications
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Journal Article
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ISItika Saha
Itika Saha
PCPatricia Yuste Checa
Patricia Yuste Checa
MPMiguel Da Silva Padilha
Miguel Da Silva Padilha
QGQiang Guo
Qiang Guo
RKRoman Körner
Roman Körner
MHMark S. Hipp
Mark S. Hipp
Amyloid-like aggregates of the microtubule-associated protein Tau are associated with several neurodegenerative disorders including Alzheimer’s disease. The existence of cellular machinery for the removal of such aggregates has remained unclear, as specialized disaggregase chaperones are thought to be absent in mammalian cells. Here we show in cell culture and in neurons that the hexameric ATPase valosin-containing protein (VCP) is recruited to ubiquitylated Tau fibrils, resulting in their efficient disaggregation. Aggregate clearance depends on the functional cooperation of VCP with heat shock 70 kDa protein (Hsp70) and the ubiquitin-proteasome machinery. While inhibition of VCP activity stabilizes large Tau aggregates, disaggregation by VCP generates seeding-active Tau species as byproduct. These findings identify VCP as a core component of the machinery for the removal of neurodegenerative disease aggregates and suggest that its activity can be associated with enhanced aggregate spreading in tauopathies.

14 October 2021 in Nature Communications
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MSMatthias M. Schneider
Matthias M. Schneider
SGSaurabh Gautam
Saurabh Gautam
THTherese W. Herling
Therese W. Herling
EAEwa Andrzejewska
Ewa Andrzejewska
GKGeorg Krainer
Georg Krainer
Tuomas KnowlesTuomas Knowles
Tuomas Knowles
Molecular chaperones contribute to the maintenance of cellular protein homoeostasis through assisting de novo protein folding and preventing amyloid formation. Chaperones of the Hsp70 family can further disaggregate otherwise irreversible aggregate species such as α-synuclein fibrils, which accumulate in Parkinson’s disease. However, the mechanisms and kinetics of this key functionality are only partially understood. Here, we combine microfluidic measurements with chemical kinetics to study α-synuclein disaggregation. We show that Hsc70 together with its co-chaperones DnaJB1 and Apg2 can completely reverse α-synuclein aggregation back to its soluble monomeric state. This reaction proceeds through first-order kinetics where monomer units are removed directly from the fibril ends with little contribution from intermediate fibril fragmentation steps. These findings extend our mechanistic understanding of the role of chaperones in the suppression of amyloid proliferation and in aggregate clearance, and inform on possibilities and limitations of this strategy in the development of therapeutics against synucleinopathies.

23 October 2015 in The Journal of Physical Chemistry B
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SMSanjib K. Mukherjee
Sanjib K. Mukherjee
SGSaurabh Gautam
Saurabh Gautam
SBSaikat Biswas
Saikat Biswas
JKJayanta Kundu
Jayanta Kundu
PCPramit K. Chowdhury
Pramit K. Chowdhury

1 May 2017 in Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
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Journal Article
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SGSaurabh Gautam
Saurabh Gautam
SKSandip Karmakar
Sandip Karmakar
RBRadhika Batra
Radhika Batra
PSPankaj Sharma
Pankaj Sharma
PPPrashant Pradhan
Prashant Pradhan
PCPramit K. Chowdhury
Pramit K. Chowdhury

20 June 2014 in Biochemistry
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SGSaurabh Gautam
Saurabh Gautam
SKSandip Karmakar
Sandip Karmakar
ABAbhik Bose
Abhik Bose
PCPramit K. Chowdhury
Pramit K. Chowdhury

9 September 2013 in PLOS ONE
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SAShadab Ahmed
Shadab Ahmed
ALAna S Luis
Ana S Luis
JBJoana L. A. Bras
Joana L. A. Bras
AGArabinda Ghosh
Arabinda Ghosh
SGSaurabh Gautam
Saurabh Gautam
AGArun Goyal
Arun Goyal
The study describes a comparative analysis of biochemical, structural and functional properties of two recombinant derivatives from Clostridium thermocellum ATCC 27405 belonging to family 43 glycoside hydrolase. The family 43 glycoside hydrolase encoding α-L-arabinofuranosidase (Ct43Araf) displayed an N-terminal catalytic module CtGH43 (903 bp) followed by two carbohydrate binding modules CtCBM6A (405 bp) and CtCBM6B (402 bp) towards the C-terminal. Ct43Araf and its truncated derivative CtGH43 were cloned in pET-vectors, expressed in Escherichia coli and functionally characterized. The recombinant proteins displayed molecular sizes of 63 kDa (Ct43Araf) and 34 kDa (CtGH43) on SDS-PAGE analysis. Ct43Araf and CtGH43 showed optimal enzyme activities at pH 5.7 and 5.4 and the optimal temperature for both was 50°C. Ct43Araf and CtGH43 showed maximum activity with rye arabinoxylan 4.7 Umg−1 and 5.0 Umg−1, respectively, which increased by more than 2-fold in presence of Ca2+ and Mg2+ salts. This indicated that the presence of CBMs (CtCBM6A and CtCBM6B) did not have any effect on the enzyme activity. The thin layer chromatography and high pressure anion exchange chromatography analysis of Ct43Araf hydrolysed arabinoxylans (rye and wheat) and oat spelt xylan confirmed the release of L-arabinose. This is the first report of α-L-arabinofuranosidase from C. thermocellum having the capacity to degrade both p-nitrophenol-α-L-arabinofuranoside and p-nitrophenol-α-L-arabinopyranoside. The protein melting curves of Ct43Araf and CtGH43 demonstrated that CtGH43 and CBMs melt independently. The presence of Ca2+ ions imparted thermal stability to both the enzymes. The circular dichroism analysis of CtGH43 showed 48% β-sheets, 49% random coils but only 3% α-helices.