Cheng-Yan Wu

Cheng-Yan Wu


Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 January 2021 in Computational and Mathematical Methods in Medicine
Verified
Journal Article
Open access
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HZHasan Zulfiqar
Hasan Zulfiqar
MMMuhammad Shareef Masoud
Muhammad Shareef Masoud
HYHui Yang
Hui Yang
SHShu-Guang Han
Shu-Guang Han
CWCheng-Yan Wu
Cheng-Yan Wu
Hao LinHao Lin
Hao Lin
Allergens have the ability to enter the body and cause illness. Leukotriene is the widespread allergen which could stimulate mast cells to discharge histamine which causes allergy symptoms. An effective strategy for treating leukotriene-induced allergy is to find the inhibitors of leukotriene or histamine activity from phytochemicals. For this purpose, a library of 8,500 phytochemicals was generated using MOE software. The structures of histamine-1 receptor and cysteinyl leukotriene receptor-1 were predicted by the homology modeling method through the SWISS model. The phytochemicals were docked with predicted structures of histamine-1 and cysteinyl leukotriene receptor-1 in MOE software to determine the binding affinity of the phytochemicals against the targets. Moreover, chemoinformatics properties and ADMET of phytochemicals were assessed to find the drug likeness behavior of compounds. Compound ID 10054216 has the lowest -score value for H-1 receptor that is -18.9186 kcal/mol which is lower than the value of standard -15.167 kcal/mol. The other compounds 393471, 71448939, 10722577, and 442614 also showed good -score values than the standard. Moreover, compound ID 11843082 has the lowest -score value for CL1R that is -15.481 kcal/mol which is lower than the value of standard -12.453 kcal/mol. The other compounds 72284, 5282102, 66559251, and 102506430 also showed good -score values than the standard. In this research article, we performed molecular docking to find the best inhibitors against H1R and CL1R and their antiallergic efficacy. This in silico knowledge will be helpful in near future for the design of novel, safe, and less costing H-1 receptor and CL1R inhibitors with the aim to improve human life quality.

11 November 2020 in Current Bioinformatics
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Journal Article
Closed access
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CWCheng-Yan Wu
Cheng-Yan Wu
QLQianzhong Li
Qianzhong Li
RXRu Xinga
Ru Xinga
GFGuo-Liang Fan
Guo-Liang Fan
Background: The non-coding RNA identification at the organelle genome level is a challenging task. In our previous work, an ncRNA dataset with less than 80% sequence identity was built, and a method incorporating an increment of diversity combining with support vector machine method was proposed. Objective: Based on the ncRNA_361 dataset, a novel decision-making method-an improved KNN (iKNN) classifier was proposed. Methods: In this paper, based on the iKNN algorithm, the physicochemical features of nucleotides, the degeneracy of genetic codons, and topological secondary structure were selected to represent the effective ncRNA characters. Then, the incremental feature selection method was utilized to optimize the feature set. Results: The results of iKNN indicated that the decision-making method of mean value is distinctly superior to the traditional decision-making method of majority vote the Increment of Diversity Combining Support Vector Machine (ID-SVM). The iKNN algorithm achieved an overall accuracy of 97.368% in the jackknife test, when k=3. Conclusion: It should be noted that the triplets of the structure-sequence mode under reading frames not only contains the entire sequence information but also reflects whether the base was paired or not, and the secondary structural topological parameters further describe the ncRNA secondary structure on the spatial level. The ncRNA dataset and the iKNN classifier are freely available at http://202.207.14.87:8032/fuwu/iKNN/index.asp.

17 March 2025 in International Journal of Biological Macromolecules
Verified
Journal Article
Closed access
DQDanyang Qi
Danyang Qi
CWCheng-Yan Wu
Cheng-Yan Wu
ZHZhihong Hao
Zhihong Hao
ZZZheng Zhang
Zheng Zhang
LLLi Liu
Li Liu

18 December 2024 in Methods
Verified
Journal Article
Closed access
CWCheng-Yan Wu
Cheng-Yan Wu
ZXZhi-Xue Xu
Zhi-Xue Xu
NLNan Li
Nan Li
DQDan-Yang Qi
Dan-Yang Qi
HWHong-Ye Wu
Hong-Ye Wu
YJYan-Ting Jin
Yan-Ting Jin

11 September 2024 in Computational Biology and Chemistry
Verified
Journal Article
Closed access
CWCheng-Yan Wu
Cheng-Yan Wu
ZXZhi-Xue Xu
Zhi-Xue Xu
NLNan Li
Nan Li
DQDan-Yang Qi
Dan-Yang Qi
ZHZhi-Hong Hao
Zhi-Hong Hao
YJYan-Ting Jin
Yan-Ting Jin