Ricardo Aparicio

Prof. Dr. Ricardo Aparicio

Laboratory of Structural Biology and Crystallography Institute of Chemistry, University of Campinas (UNICAMP) Campinas, SP, Brazil

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 August 2016 in Scientific Reports
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Journal Article
Open access
VSValéria Scorsato
Valéria Scorsato
TLTatiani B. Lima
Tatiani B. Lima
GRGermanna L. Righetto
Germanna L. Righetto
NZNilson I. T. Zanchin
Nilson I. T. Zanchin
JBJosé Brandão-Neto
José Brandão-Neto
RARicardo Aparicio
Ricardo Aparicio
TOR signaling pathway regulator-like (TIPRL) is a regulatory protein which inhibits the catalytic subunits of Type 2A phosphatases. Several cellular contexts have been proposed for TIPRL, such as regulation of mTOR signaling, inhibition of apoptosis and biogenesis and recycling of PP2A, however, the underlying molecular mechanism is still poorly understood. We have solved the crystal structure of human TIPRL at 2.15 Å resolution. The structure is a novel fold organized around a central core of antiparallel beta-sheet, showing an N-terminal α/β region at one of its surfaces and a conserved cleft at the opposite surface. Inside this cleft, we found a peptide derived from TEV-mediated cleavage of the affinity tag. We show by mutagenesis, pulldown and hydrogen/deuterium exchange mass spectrometry that this peptide is a mimic for the conserved C-terminal tail of PP2A, an important region of the phosphatase which regulates holoenzyme assembly, and TIPRL preferentially binds the unmodified version of the PP2A-tail mimetic peptide DYFL compared to its tyrosine-phosphorylated version. A docking model of the TIPRL-PP2Ac complex suggests that TIPRL blocks the phosphatase’s active site, providing a structural framework for the function of TIPRL in PP2A inhibition.

31 January 2008 in BMC Structural Biology
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LBLucas Bleicher
Lucas Bleicher
RARicardo Aparicio
Ricardo Aparicio
FNFabio M Nunes
Fabio M Nunes
LMLeandro Martinez
Leandro Martinez
SDSandra M Gomes Dias
Sandra M Gomes Dias
Igor PolikarpovIgor Polikarpov
Igor Polikarpov
Background: Thyroid receptors, TRα and TRβ, are involved in important physiological functions such as metabolism, cholesterol level and heart activities. Whereas metabolism increase and cholesterol level lowering could be achieved by TRβ isoform activation, TRα activation affects heart rates. Therefore, β-selective thyromimetics have been developed as promising drug-candidates for treatment of obesity and elevated cholesterol level. GC-1 [3,5-dimethyl-4-(4'-hydroxy-3'-isopropylbenzyl)-phenoxy acetic acid] has ability to lower LDL cholesterol with 600- to 1400-fold more potency and approximately two- to threefold more efficacy than atorvastatin (Lipitor©) in studies in rats, mice and monkeys. Results: To investigate GC-1 specificity, we solved crystal structures and performed molecular dynamics simulations of both isoforms complexed with GC-1. Crystal structures reveal that, in TRα Arg228 is observed in multiple conformations, an effect triggered by the differences in the interactions between GC-1 and Ser277 or the corresponding asparagine (Asn331) of TRβ. The corresponding Arg282 of TRβ is observed in only one single stable conformation, interacting effectively with the ligand. Molecular dynamics support this model: our simulations show that the multiple conformations can be observed for the Arg228 in TRα, in which the ligand interacts either strongly with the ligand or with the Ser277 residue. In contrast, a single stable Arg282 conformation is observed for TRβ, in which it strongly interacts with both GC-1 and the Asn331. Conclusion: Our analysis suggests that the key factors for GC-1 selectivity are the presence of an oxyacetic acid ester oxygen and the absence of the amino group relative to T3. These results shed light into the β-selectivity of GC-1 and may assist the development of new compounds with potential as drug candidates to the treatment of hypercholesterolemia and obesity.

1 August 2015 in Bioorganic & Medicinal Chemistry
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Journal Article
Closed access
EFEmanuella M.B. Fonseca
Emanuella M.B. Fonseca
DTDaniela Barretto Barbosa Trivella
Daniela Barretto Barbosa Trivella
VSValéria Scorsato
Valéria Scorsato
MDMariana P. Dias
Mariana P. Dias
NBNatália L. Bazzo
Natália L. Bazzo
RARicardo Aparicio
Ricardo Aparicio

1 January 2008 in BMC Biochemistry
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SOSimone Cb Oliveira
Simone Cb Oliveira
FFFabiana V Fonseca
Fabiana V Fonseca
EAEdson Antunes
Edson Antunes
ECEnilton Camargo
Enilton Camargo
RMRafael P Morganti
Rafael P Morganti
MTMarcos Hikari Toyama
Marcos Hikari Toyama
An interaction between lectins from marine algae and PLA2 from rattlesnake was suggested some years ago. We, herein, studied the effects elicited by a small isolectin (BTL-2), isolated from Bryothamnion triquetrum, on the pharmacological and biological activities of a PLA2 isolated from rattlesnake venom (Crotalus durissus cascavella), to better understand the enzymatic and pharmacological mechanisms of the PLA2 and its complex.

Verified
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MSMarcelo L. Dos Santos
Marcelo L. Dos Santos
FFFábio H. R. Fagundes
Fábio H. R. Fagundes
BTBruno R. F. Teixeira
Bruno R. F. Teixeira
MTMarcos Hikari Toyama
Marcos Hikari Toyama
RARicardo Aparicio
Ricardo Aparicio
BjVIII is a new myotoxic Lys49-PLA2 isolated from Bothrops jararacussu venom that exhibits atypical effects on human platelet aggregation. To better understand the mode of action of BjVIII, crystallographic studies were initiated. Two crystal forms were obtained, both containing two molecules in the asymmetric unit (ASU). Synchrotron radiation diffraction data were collected to 2.0 °A resolution and 1.9 °A resolution for crystals belonging to the space group P212121 (a = 48:4 A° , b = 65:3 A° , c = 84:3 A° ) and space group P3121 (a = b = 55:7 A° , c = 127:9 A° ), respectively. Refinement is currently in progress and the refined structures are expected to shed light on the unusual platelet aggregation activity observed for BjVIII.

22 March 2017 in Acta Crystallographica Section F Structural Biology Communications
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EFEmanuella Maria Barreto Fonseca
Emanuella Maria Barreto Fonseca
VSValéria Scorsato
Valéria Scorsato
MSMarcelo Leite dos Santos
Marcelo Leite dos Santos
AJAtilio Tomazini Júnior
Atilio Tomazini Júnior
STSusely Ferraz Siqueira Tada
Susely Ferraz Siqueira Tada
RARicardo Aparicio
Ricardo Aparicio