In this paper, the history, present status, and future of density-functional theory (DFT) is informally reviewed and discussed by 70 workers in the field, including molecular scientists, materials scientists, method developers and practitioners.
This study aims to assess present day density functionals in the description of spin crossover iron(II) complexes. Two recently synthesized spin crossover complexes were considered. Theoretical calculations were made using 53 of the most popular exchange-correlation density functionals with triple zeta plus polarization quality basis sets. The present work shows that even though different density functionals can lead to different energy gaps between spin states, most of them are very similar for these two compounds when a comparison between energy gaps is sought. The present work shows that even though different exchange correlations can lead to different energy gaps between spin states, the difference between these gaps calculated at different geometries and that calculated at a given reference geometry is surprisingly independent of the choice of functional. The reasons for the similarities and the differences among exchange and correlation functional combinations are discussed.
22 November 2010 in Physical Chemistry Chemical Physics
The formation of dimethyl carbonate (DMC) from CO2 and methanol with the dimer [n-Bu2Sn(OCH3)2]2 was investigated by experimental kinetics in support of DFT calculations. Under the reaction conditions (357–423 K, 10–20 MPa), identical initial rates are observed with three different reacting mixtures, CO2 /toluene, supercritical CO2 , and CO2 /methanol, and are consistent with the formation of monomeric di-n-butyltin(IV) species. An intramolecular mechanism is, therefore, proposed with an Arrhenius activation energy amounting to 104 ± 10 kJ mol−1 for DMC synthesis. DFT calculations on the [(CH3)2Sn(OCH3)2]2 /CO2 system show that the exothermic insertion of CO2 into the Sn–OCH3 bond occurs by a concerted Lewis acid–base interaction involving the tin center and the oxygen atom of the methoxy ligand. The Gibbs energy diagrams highlight that, under the reaction conditions, the dimer–monomer equilibrium is significantly shifted towards monomeric species, in agreement with the experimental kinetics. Importantly, the two Sn–OCH3 bonds are prompt to insert CO2 . These results provide new insight into the reaction mechanism and catalyst design to enhance the turnover numbers.
31 March 2015 in Physical Chemistry Chemical Physics
The different fragmentation channels of cytosine, adenine and guanine have been studied through DFT calculations. The electronic structure of bases, their cations, and the fragments obtained by breaking bonds provides a good understanding of the fragmentation process that can complete the experimental approach. The calculations allow assigning various fragments to the given peaks. The comparison between the energy required for the formation of fragments and the peak intensity in the mass spectrum is used. For cytosine and guanine the elimination of the HNCO molecule is a major route of dissociation, while for adenine multiple loss of HCN or HNC can be followed up to small fragments. For cytosine, this corresponds to the initial bond cleavage of N3–C4/N1–C2, which represents the main dissociation route. For guanine the release of HNCO is obtained through the N1–C2/C5–C6 bond cleavage (reverse order also possible) leading to the largest peak of the spectrum. The corresponding energies of 3.5 and 3.9 eV are typically in the range available in the experiments. The loss of NH3 or HCN is also possible but requires more energy. For adenine, fragmentation consists of multiple loss of the HCN molecule and the main route corresponding to HC8N9 loss is followed by the release of HC2N1.
The fragmentation process of the uracil RNA base has been investigated via DFT calculations in order to assign fragments to the ionisation mass spectrum obtained after dissociation induced by collision experiments. The analysis of the electronic distribution and geometry parameters of the cation allows selection of several bonds that may be cleaved and lead to the formation of various fragments. Differences are observed in the electronic behaviour of the bond breaking as well as the energy required for the cleavage. It is reported that N3–C4 and N1–C2 bonds are more easily cleaved than the C5–C6 bond, since the corresponding energy barriers amount to ΔG = +1.627, +1.710, +5.459 eV, respectively, which makes the C5–C6 bond cleavage almost prohibited. Among all possible formed fragments, the formation of the OCN+ fragment for the peak at m/z = 42 Da is excluded because of an intermediate that was not observed experimentally and too a large free energy barrier. Based on the required free energy, it is observed that two fragment derivatives: C2H4N+ and C2H2O˙+ may be formed, with a small preference for C2H4N+. This latter product is not formed through a retro Diels Alder reaction in contrast to C2H2O˙+. The following sequence is proposed for the peak at 42 Da: C2H4N+ (from N1–C2, C4–C5 cleavages) > C2H2O˙+ (from N3–C4, N1–C2 and C5–C6 cleavages) > C2H4N+ (from N1–C2, N3–C4 and C4–C5) > C2H2O˙+ (from C5–C6, N1–C2 and N3–C4 cleavages) > NCO+ (from N1–C2, C4–C5 and N3–C4 cleavages). Finally the peak at 28 Da is assigned to CNH2+ derivatives that can be formed through two different paths, the easiest one requiring 5.4 eV.