Farhat Avin

Dr. Farhat Avin


Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 April 2021 in Plant Disease
Verified
Journal Article
Closed access
MPMilan Panth
Milan Panth
FBFulya Baysal-Gurel
Fulya Baysal-Gurel
FAFarhat Avin
Farhat Avin
TSTerri Simmons
Terri Simmons
Soilborne diseases caused by pathogens such as Phytophthora, Rhizoctonia, Fusarium, Verticillium, and Pythium species are the most important diseases of woody ornamentals. Ginkgo (Ginkgo biloba) and red maple (Acer rubrum ‘October Glory’) plants grown in containers and fields in Tennessee showed root and crown rot symptoms with dark brown to black lesions in 2017 and 2018. The objective of this research was to isolate and identify pathogens affecting ginkgo and red maple plants in Tennessee nurseries and to develop fungicide/biofungicide management recommendations for nursery producers. Isolations were made from the infected roots. Several Phytophthora-like colonies with spherical zoospores, filamentous to globose oogoni, and whitish mycelium were isolated on V8-PARPH medium. To confirm identity, total genomic DNA was extracted, followed by sequence analysis of the internal transcribed spacer regions, large subunit of nuclear rRNA, and cytochrome c oxidase subunits I and II of mitochondrial DNA. Based on morphological and molecular analysis, Phytopythium vexans was described as a causal agent of crown and root rot from the infected ginkgo and red maple plants. To complete Koch’s postulates, a pathogenicity test was performed by drenching 100 ml of V8 agar medium slurry of Phytopythium vexans inoculum on 1-year-old potted ginkgo plant root systems as well as red maple October Glory. Necrotic lesion development was observed in the root system 45 days after inoculation and Phytopythium vexans was reisolated from the roots of both ginkgo and red maple. All control ginkgo and red maple plants remained disease free and no pathogen was reisolated. In addition, the efficacy of fungicides, biofungicides, fertilizer, and host plant defense inducers (traditionally recommended for management of oomycete diseases) for control of Phytopythium crown and root rot was evaluated on ginkgo and red maple October Glory seedlings in greenhouse and field trials. Fungicides such as Empress Intrinsic, Pageant Intrinsic, Segovis, and Subdue MAXX were effective in both greenhouse and field trials, and the biofungicide Stargus reduced disease severity caused by pathogen Phytopythium vexans on ginkgo and red maple plants in greenhouse trials. These results will help nursery producers make proper management decisions for newly reported Phytopythium crown and root rot disease of ginkgo and red maple plants.

11 February 2012 in Molecular Biology Reports
Verified
Journal Article
Closed access
PDF file
FAFarhat Avin
Farhat Avin
SBSubha Bhassu
Subha Bhassu
TSTan Yee Shin
Tan Yee Shin
VSVikineswary Sabaratnam
Vikineswary Sabaratnam

1 January 2021 in Plant Disease
Verified
Journal Article
Closed access
FBFulya Baysal-Gurel
Fulya Baysal-Gurel
PLPrabha Liyanapathiranage
Prabha Liyanapathiranage
MPMilan Panth
Milan Panth
FAFarhat Avin
Farhat Avin
TSTerri Simmons
Terri Simmons
Flowering cherry (Prunus serrulata Lindl. 'Kwanzan') rooted cuttings grown in propagation beds containing 40% coarse sand and 60% ground pine bark in a commercial propagation nursery in Warren Coun...

1 September 2012 in Fish & Shellfish Immunology
Verified
Journal Article
Closed access
JAJesu Arockiaraj
Jesu Arockiaraj
FAFarhat Avin
Farhat Avin
PVPuganeshwaran Vanaraja
Puganeshwaran Vanaraja
SESarasvathi Easwvaran
Sarasvathi Easwvaran
ASArun Singh
Arun Singh
SBSubha Bhassu
Subha Bhassu

19 January 2016 in Euphytica
Verified
Journal Article
Closed access
PDF file
FAFarhat Avin
Farhat Avin
SBSubha Bhassu
Subha Bhassu
VRValiollah Rameeh
Valiollah Rameeh
YTYee Shin Tan
Yee Shin Tan
SVSabaratnam Vikineswary
Sabaratnam Vikineswary

1 January 2014 in The Scientific World Journal
Verified
Journal Article
Open access
PDF file
FAFarhat Avin
Farhat Avin
SBSubha Bhassu
Subha Bhassu
YTYee Shin Tan
Yee Shin Tan
PSPedram Shahbazi
Pedram Shahbazi
SVSabaratnam Vikineswary
Sabaratnam Vikineswary
Identification of edible mushrooms particularlyPleurotusgenus has been restricted due to various obstacles. The present study attempted to use the combination of two variable regions of IGS1 and ITS for classifying the economically cultivatedPleurotusspecies. Integration of the two regions proved a high ability that not only could clearly distinguish the species but also served sufficient intraspecies variation. Phylogenetic tree (IGS1 + ITS) showed seven distinct clades, each clade belonging to a separate species group. Moreover, the species differentiation was tested by AMOVA and the results were reconfirmed by presenting appropriate amounts of divergence (91.82% among and 8.18% within the species). In spite of achieving a proper classification of species by combination of IGS1 and ITS sequences, the phylogenetic tree showed the misclassification of the species ofP. nebrodensisandP. eryngiivar.ferulaewith other strains ofP. eryngii. However, the constructed median joining (MJ) network could not only differentiate between these species but also offer a profound perception of the species’ evolutionary process. Eventually, due to the sufficient variation among and within species, distinct sequences, simple amplification, and location between ideal conserved ribosomal genes, the integration of IGS1 and ITS sequences is recommended as a desirable DNA barcode.