Tomoharu Matsumoto

Mr. Tomoharu Matsumoto

orcid

Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
11 October 2023 in Journal of Molecular Biology
Verified
Journal Article
Open access
KOKaoru Okura
Kaoru Okura
TMTomoharu Matsumoto
Tomoharu Matsumoto
ANAkihiro Narita
Akihiro Narita
Hitoshi TatsumiHitoshi Tatsumi
Hitoshi Tatsumi
A variety of biological roles of mechanical forces have been proposed in cell biology, such as cell signaling pathways for survival, development, growth, and differentiation. Mechanical forces alter the mechanical conditions within cells and their environment, which strongly influences the reorganization of the actin cytoskeleton. Single-molecule imaging studies of actin filaments have led to the hypothesis that the actin filament acts as a mechanosensor; e.g., increases in actin filament tension alter their conformation and affinity for regulatory proteins. However, our understanding of the molecular mechanisms underlying how tension modulates the mechanical behavior of a single actin filament is still incomplete. In this study, a direct measurement of the twisting and bending of a fluorescently labeled single actin filament under different tension levels by force application (0.8-3.4 pN) was performed using single-molecule fluorescence polarization (SMFP) microscopy. The results showed that the amplitude of twisting and bending fluctuations of a single actin filament decreased with increasing tension. Electron micrograph analysis of tensed filaments also revealed that the fluctuations in the crossover length of actin filaments decreased with increasing filament tension. Possible molecular mechanisms underlying these results involving the binding of actin-binding proteins, such as cofilin, to the filament are discussed.

8 May 2020 in Biomolecules
Verified
Journal Article
Open access
PDF file
MMMizuki Matsuzaki
Mizuki Matsuzaki
IFIkuko Fujiwara
Ikuko Fujiwara
SKSae Kashima
Sae Kashima
TMTomoharu Matsumoto
Tomoharu Matsumoto
TOToshiro Oda
Toshiro Oda
ANAkihiro Narita
Akihiro Narita
Depolymerization and polymerization of the actin filament are indispensable in eukaryotes. The DNase I binding loop (D-loop), which forms part of the interface between the subunits in the actin filament, is an intrinsically disordered loop with a large degree of conformational freedom. Introduction of the double mutation G42A/G46A to the D-loop of the beta cytoskeletal mammalian actin restricted D-loop conformational freedom, whereas changes to the critical concentration were not large, and no major structural changes were observed. Polymerization and depolymerization rates at both ends of the filament were reduced, and cofilin binding was inhibited by the double mutation. These results indicate that the two glycines at the tip of the D-loop are important for actin dynamics, most likely by contributing to the large degree of conformational freedom.

15 July 2026 in Science Advances
Verified
Journal Article
Open access
LTLinh T Tran
Linh T Tran
SASamson Ali
Samson Ali
TMTomoharu Matsumoto
Tomoharu Matsumoto
YYYosuke Yamazaki
Yosuke Yamazaki
ANAkihiro Narita
Akihiro Narita
RRRobert C Robinson
Robert C Robinson
Eukaryotic microtubules are typically 13-protofilament tubes assembled from α/β-tubulin heterodimers that combine mechanical rigidity with dynamic instability. Homologous tubulins have been identified in Asgard archaea, the closest prokaryotic relatives to eukaryotes. Here, we characterize a heterodimeric α/β-tubulin system from Heimdallarchaeales. Biochemical reconstitution shows that Heim-α/β-tubulin forms a heterodimer that undergoes guanosine 5'-triphosphate-dependent polymerization with coupled nucleotide hydrolysis. Cryo-electron microscopy reveals that the polymers are composed of four-protofilament tubules, with microtubule-like lattices formed by conserved longitudinal interfaces and ball-and-socket lateral contacts. Single-filament imaging demonstrates intrinsic kinetic polarity and dynamic instability, while liposome encapsulation shows that microtubule growth generates forces sufficient to deform membranes. Despite their reduced protofilament number, Heim-α/β-microtubules share key structural and dynamic features with eukaryotic microtubules but exhibit lower bending stiffness and polymerization force. Thus, microtubule-like polymers can form from a range of protofilament numbers, with reduced architectures potentially adapted to small cellular dimensions and lower mechanical loads. Together, our results indicate expansion in microtubule protofilament number during eukaryogenesis.

1 January 2008 in Seibutsu Butsuri
Verified
Journal Article
Open access
PDF file
KYKei-Ichi Yamaguchi
Kei-Ichi Yamaguchi
TMTomoharu Matsumoto
Tomoharu Matsumoto
JHJunji Hosokawa-Muto
Junji Hosokawa-Muto
KKKazuo Kuwata
Kazuo Kuwata
Japan's largest platform for academic e-journals: J-STAGE is a full text database for reviewed academic papers published by Japanese societies