Background: Manganese is an essential micronutrient that plays a pivotal role in environmental systems, plant physiology, and human health. This review comprehensively examines the manganese cycle in the environment, its absorption and transport mechanisms in plants, and the implications of manganese exposure to human health. Objectives: The objectives of this review are to (i) analyze the environmental cycling of manganese and its bioavailability, (ii) evaluate the role of manganese in plant metabolism and disease resistance, and (iii) assess the impact of manganese toxicity and deficiency on human health. Conclusion: This review highlights that while manganese is crucial for photosynthesis, enzyme activation, and resistance to plant diseases, both its deficiency and toxicity can have severe consequences. In plants, manganese deficiency can lead to impaired growth and reduced crop yields, while toxicity, particularly in acidic soils, can inhibit photosynthesis and stunt development. In humans, manganese is necessary for various physiological processes, but overexposure, especially in occupational settings, can result in neurodegenerative conditions such as manganism. The conclusion emphasizes the importance of managing manganese levels in agriculture and industry to optimize its benefits while minimizing health risks. A multidisciplinary approach is advocated to enhance agricultural productivity and ensure public health safety.

The quality of soil organic matter plays a central role in soil structure, carbon sequestration and pollutant immobilization. The effect of 16–23 years of fertilization on the quality of soil organic matter was studied in field experiments at ten experimental sites in Central Europe. Soil samples were collected in 2016 after barley harvest. Six crops were rotated: pea–canola–winter wheat–spring barley–beet/potato–spring barley. Six treatments were studied: unfertilized control, mineral fertilization (NPK), farmyard manure, farmyard manure + NPK, straw incorporation, and straw incorporation + NPK. Although carbon input did not significantly correlate with any soil organic carbon fractions, the C/N ratio of applied organic fertilizers significantly correlated with the content of humic acid carbon (C-HA), the C-HA/C-FA ratio and humification index in soil. The combination of farmyard manure + NPK resulted in a higher humic acid carbon content in soil, humification rate, and humification index compared to the application of NPK, straw return, and the combination of straw return + NPK. Although straw return led to a lower E4/E6 (A400/A600, Q4/6) ratio compared to farmyard manure application, the C-HA/C-FA ratio was unchanged among these treatments. The application of farmyard manure with and without the addition of NPK led to higher values of carbon sequestration efficiency in soil compared to the straw return with and without the addition of NPK.

Soil organic matter carbon (C_SOM) compounds degradation was observed in long-term field experiments with silage maize monoculture. Over a period of 26 years, the content of carbon in topsoil decreased by 22% in control unfertilized plots compared to 25% and 26% in treatments fertilized annually with mineral nitrogen. With annual wheat straw application (together with mineral N), the content of C_SOM decreased by 8%. Contrary to that, the annual application of farmyard manure resulted in a C_SOM increase of 16%. The ratio of carbon produced by maize related to total topsoil C_SOM content ranged between 8.1–11.8%. In plots with mineral N fertilization, this ratio was always higher than in the unfertilized control plots. With the weaker soil extraction agent (CaCl₂), the ratio of carbon produced by maize was determined to be 17.9–20.7%. With stronger extraction agent (pyrophosphate) it was only 10.2–14.6%. This shows that maize produced mostly unstable carbon compounds. Mineral N application resulted in stronger mineralization of original and stable organic matter compared to the unfertilized control. However, the increase of maize-produced carbon content in fertilized plots did not compensate for the decrease of “old” organic matter. As a result, a tendency to decrease total C_SOM content in plots with mineral N applied was observed.

As with new technologies, plant nutrition has taken a big step forward in the last two decades. The main objective of this review is to briefly summarise the main pathways in modern plant nutrition and attract potential researchers and publishers to this area. First, this review highlights the importance of long-term field experiments, which provide us with valuable information about the effects of different applied strategies. The second part is dedicated to the new analytical technologies (tomography, spectrometry, and chromatography), intensively studied environments (rhizosphere, soil microbial communities, and enzymatic activity), nutrient relationship indexes, and the general importance of proper data evaluation. The third section is dedicated to the strategies of plant nutrition, i.e., (i) plant breeding, (ii) precision farming, (iii) fertiliser placement, (iv) biostimulants, (v) waste materials as a source of nutrients, and (vi) nanotechnologies. Finally, the increasing environmental risks related to plant nutrition, including biotic and abiotic stress, mainly the threat of soil salinity, are mentioned. In the 21st century, fertiliser application trends should be shifted to local application, precise farming, and nanotechnology; amended with ecofriendly organic fertilisers to ensure sustainable agricultural practices; and supported by new, highly effective crop varieties. To optimise agriculture, only the combination of the mentioned modern strategies supported by a proper analysis based on long-term observations seems to be a suitable pathway.

The influence of different fertilizers (mineral/organic) on the quantity and quality of soil organic matter was monitored in long-term stationary experiments (27 years) with silage maize monoculture production on Luvisol. The main aim of this study was to investigate the relationship between easily extractable glomalin (EEG), total glomalin (TG), and parameters commonly used for the determination of soil organic matter quality, i.e., the content of humic acids (C_HA), fulvic acids (C_FA), and potential wettability index (PWI). A significant correlation was found between EEG content and C_SOM content, humic acid content (C_HA), humic acid/fulvic acid ratio (C_HA/C_FA), PWI, and index of aromaticity (IAR). Furthermore, the contents of EEG and TG correlated with soil organic carbon (C_SOM). Periodical application of sewage sludge and cattle slurry increased the content of glomalin in soils. From the results, it is obvious that data about glomalin content can be used to study soil organic matter quality. A more sensitive method (a method that reacts more to changes in components of soil fertility) seems to be the determination of EEG rather than TG. The factors supporting use of EEG extraction in agronomic practice are mainly the substantially shorter time of analysis than TG, C_HA, and C_FA determination and lower chemical consumption. Furthermore, the PWI method is even suitable for studying soil organic matter quality. On the other hand, the humus quality ratio (E4/E6) does not provide relevant information about soil organic matter quality.

The glomalin content is generally considered an indicator of the soil organic matter (SOM) quality. The content of easily extractable glomalin (EEG) and the total glomalin (TG) content was investigated across 71 different sites in the Czech Republic with arable soil and crop production (12 chernozems, 30 luvisols, 17 cambisols, and 12 fluvisols). The majority of the crops in the crop rotation were cereals (45.5%—mainly winter wheat, winter barley, and spring barley). The proportion of winter canola within the crop rotation was 15.9%. The contribution of other crops was substantially smaller (alfalfa, clover, potatoes, beet, silage maize, grain maize). The representation of crops in the crop rotation is standard for conventional farming in the Czech Republic. Based on the results of long-term field monitoring at 71 sites in different soil–climate conditions, we can state the following. The TG content was significantly correlated with the soil organic matter carbon content (C_SOM), as well as another important indicator of SOM quality (humic and fulvic acid carbon content ratio—C_HA/C_FA). A significant and positive correlation was also determined for the TG and clay content (size < 0.002 mm), as well as particles smaller than 0.01 mm. The easily extractable glomalin content (EEG) did not differ based on the reference soil group (RSG). On the other hand, the total glomalin content (TG) was significantly higher in the chernozem RSG in comparison with other RSGs (luvisols, cambisols, fluvisols). There was no relationship between the pHCaCl₂ and glomalin (EEG; TG). The same can be said about the relationship between glomalin (EEG; TG) and the bulk density and porosity. No link was established between the glomalin content (EEG; TG) and phosphorus plant-available content. There was no relationship between the amount of applied organic matter (carbon inputs) and the soil glomalin content (EEG; TG). This relationship was not influenced by the type of applied organic fertilizer. No significant relationship was found for either straw, manure, or compost. The data on the glomalin content are significantly influenced by the site (soil type and soil texture).