João Pires

Dr. João Pires

orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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20 September 2019 in Science
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TBThomas P. Van Boeckel
Thomas P. Van Boeckel
JPJoão Pires
João Pires
RSReshma Silvester
Reshma Silvester
CZCheng Zhao
Cheng Zhao
JSJulia Song
Julia Song
RLRamanan Laxminarayan
Ramanan Laxminarayan
Livestock antibiotic resistance: Most antibiotic use is for livestock, and it is growing with the increase in global demand for meat. It is unclear what the increase in demand for antibiotics means for the occurrence of drug resistance in animals and risk to humans. Van Boeckel et al. describe the global burden of antimicrobial resistance in animals on the basis of systematic reviews over the past 20 years (see the Perspective by Moore). There is a clear increase in the number of resistant bacterial strains occurring in chickens and pigs. The current study provides a much-needed baseline model for low- and middle-income countries and provides a “one health” perspective to which future data can be added. Science , this issue p. eaaw1944 ; see also p. 1251

1 December 2013 in Journal of Clinical Microbiology
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JPJoão Pires
João Pires
Ângela NovaisÂngela Novais
Ângela Novais
LPLuísa Peixe
Luísa Peixe

1 August 2016 in Antimicrobial Agents and Chemotherapy
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Journal Article
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OBOdette J. Bernasconi
Odette J. Bernasconi
EKEsther Kuenzli
Esther Kuenzli
JPJoão Pires
João Pires
RTRegula Tinguely
Regula Tinguely
ACAlessandra Carattoli
Alessandra Carattoli
AEAndrea Endimiani
Andrea Endimiani
Stool samples from 38 travelers returning from India were screened for extended-spectrum cephalosporin- and carbapenem-resistant Enterobacteriaceae implementing standard selective plates. Twenty-six (76.3%) people were colonized with CTX-M or DHA producers, but none of the strains was colistin resistant and/or mcr-1 positive. Nevertheless, using overnight enrichment and CHROMagar Orientation plates supplemented with colistin, four people (10.5%) were found to be colonized with colistin-resistant Escherichia coli . One cephalosporin-susceptible sequence type 10 (ST10) strain carried a 4,211-bp IS Apl1-mcr-1 -IS Apl1 element in an IncHI2 plasmid backbone.

1 December 2015 in Antimicrobial Agents and Chemotherapy
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Journal Article
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JPJoão Pires
João Pires
TSThissa N. Siriwardena
Thissa N. Siriwardena
MSMichaela Stach
Michaela Stach
RTRegula Tinguely
Regula Tinguely
SKSara Kasraian
Sara Kasraian
AEAndrea Endimiani
Andrea Endimiani
The in vitro activity of the novel antimicrobial peptide dendrimer G3KL was evaluated against 32 Acinetobacter baumannii (including 10 OXA-23, 7 OXA-24, and 11 OXA-58 carbapenemase producers) and 35 Pseudomonas aeruginosa (including 18 VIM and 3 IMP carbapenemase producers) strains and compared to the activities of standard antibiotics. Overall, both species collections showed MIC 50/90 values of 8/8 μg/ml and minimum bactericidal concentrations at which 50% or 90% of strains tested are killed (MBC 50/90 ) of 8/8 μg/ml. G3KL is a promising molecule with antibacterial activity against multidrug-resistant and extensively drug-resistant A. baumannii and P. aeruginosa isolates.

1 November 2017 in Antimicrobial Agents and Chemotherapy
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VDValentina Donà
Valentina Donà
OBOdette J. Bernasconi
Odette J. Bernasconi
JPJoão Pires
João Pires
ACAlexandra Collaud
Alexandra Collaud
GOGudrun Overesch
Gudrun Overesch
AEAndrea Endimiani
Andrea Endimiani
We characterized the genetic environment of mcr-1 in colistin-resistant Escherichia coli strains isolated in Switzerland during 2014 to 2016 from humans ( n = 3) and chicken meat ( n = 6). Whole-genome and plasmid sequencing identified the mcr-1 gene integrated in IncX4 (of which, one strain carried the mcr-1.2 variant), IncI2, IncHI2, and novel IncK2 plasmids (overall, n = 7), as well as in the bacterial chromosome ( n = 2) in single or duplicate copies. Our study supports the easy mobilization of mcr-1 across diverse genetic locations.

21 June 2013 in BMC Microbiology
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Journal Article
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Ângela NovaisÂngela Novais
Ângela Novais
Claudia VuottoClaudia Vuotto
Claudia Vuotto
JPJoão Pires
João Pires
CMCarolina Montenegro
Carolina Montenegro
Gianfranco DonelliGianfranco Donelli
Gianfranco Donelli
LPLuísa Peixe
Luísa Peixe
Phylogenetic group D Escherichia coli clones (ST69, ST393, ST405) are increasingly reported as multidrug resistant strains causing extra-intestinal infections. We aim to characterize inter- and intraclonal diversity of a broad sample (isolates from different geographic locations and origins with variable antibiotic resistance profiles, 1980-2010) and their ability to adhere and form biofilm by both a modified quantitative biofilm producing assay and Field Emission Scanning Electron Microscopy (FESEM). High virulence scores were observed among ST69 (median 14/range 9–15) and ST393 (median 14/range 8–15) clones, particularly enriched in pap alleles, iha, kpsMTII-K5 and ompT, in contrast with ST405 (median 6/range 2–14) isolates, exhibiting frequently fyuA, malX and traT. All ST69 and ST393 and only two ST405 isolates were classified as ExPEC. Biofilm production was detected in two non-clinical ST69 and three ST393 isolates from different origins showing variable virulence profiles. Within each clonal group, and despite the high diversity of PFGE-types observed, isolates from different countries and recovered over large periods of time were clustered in a few groups sharing common virulence gene profiles among ST69 (n = 10 isolates) and ST393 (n = 9 isolates) (fimH-iha-iutA-kpsMTII-K5-(traT)-sat-(ompT)-papA-papEF-papGII-papC) or ST405 (n = 6 isolates) (fimH-traT-fyuA-malX). This study highlights the circulation of highly transmissible ST69, ST393 and ST405 variants among different settings. Biofilm production seems not to be directly correlated with their epidemiological success.