Yean Jin Lim

Dr. Yean Jin Lim

orcid

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2013 in Journal of Biological Chemistry
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Journal Article
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MFMohammed Freewan
Mohammed Freewan
MRMartin D. Rees
Martin D. Rees
TPTito S. Sempértegui Plaza
Tito S. Sempértegui Plaza
EGElias Glaros
Elias Glaros
YLYean Jin Lim
Yean Jin Lim
A/Prof. Shane R. ThomasA/Prof. Shane R. Thomas
A/Prof. Shane R. Thomas
The heme enzyme indoleamine 2,3-dioxygenase (IDO) is a key regulator of immune responses through catalyzing l-tryptophan (l-Trp) oxidation. Here, we show that hydrogen peroxide (H2O2) activates the peroxidase function of IDO to induce protein oxidation and inhibit dioxygenase activity. Exposure of IDO-expressing cells or recombinant human IDO (rIDO) to H2O2 inhibited dioxygenase activity in a manner abrogated by l-Trp. Dioxygenase inhibition correlated with IDO-catalyzed H2O2 consumption, compound I-mediated formation of protein-centered radicals, altered protein secondary structure, and opening of the distal heme pocket to promote nonproductive substrate binding; these changes were inhibited by l-Trp, the heme ligand cyanide, or free radical scavengers. Protection by l-Trp coincided with its oxidation into oxindolylalanine and kynurenine and the formation of a compound II-type ferryl-oxo heme. Physiological peroxidase substrates, ascorbate or tyrosine, enhanced rIDO-mediated H2O2 consumption and attenuated H2O2-induced protein oxidation and dioxygenase inhibition. In the presence of H2O2, rIDO catalytically consumed nitric oxide (NO) and utilized nitrite to promote 3-nitrotyrosine formation on IDO. The promotion of H2O2 consumption by peroxidase substrates, NO consumption, and IDO nitration was inhibited by l-Trp. This study identifies IDO as a heme peroxidase that, in the absence of substrates, self-inactivates dioxygenase activity via compound I-initiated protein oxidation. l-Trp protects against dioxygenase inactivation by reacting with compound I and retarding compound II reduction to suppress peroxidase turnover. Peroxidase-mediated dioxygenase inactivation, NO consumption, or protein nitration may modulate the biological actions of IDO expressed in inflammatory tissues where the levels of H2O2 and NO are elevated and l-Trp is low.

31 January 2020 in Frontiers in Immunology
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Journal Article
Open access
SMSamantha Montague
Samantha Montague
YLYean Jin Lim
Yean Jin Lim
WLWoei M. Lee
Woei M. Lee
EGElizabeth E. Gardiner
Elizabeth E. Gardiner
Platelets are small anucleate cells that are essential for many biological processes including haemostasis, thrombosis, inflammation, tumour metastasis and wound healing. These minute disk shaped fragments are produced from megakaryocytes and contain many granules that hold growth factors, chemokines and other platelet-activating molecules and proteins. Platelets also have an open canalicular system (OCS), important for protein transport, and a plethora of membrane surface receptors that are vital for platelet activation and thus function, and for interactions with other cells. Platelets circulate in blood and in order to perform all of their roles in biology, platelets must be able to arrest their movement at an appropriate site and time. Our knowledge of how platelets achieve this has expanded as our ability to visualise and quantify discreet platelet events has improved. Platelets are exquisitely sensitive to changes in blood flow parameters and so the visualisation of intricate platelet processes provides a substantial challenge to the platelet imaging field. Applications of modern imaging systems to study platelet function has led to major advancements in our understanding of molecular events mediating platelet adhesion from a single-cell perspective, through to platelet recruitment and activation, leading to thrombus (clot) formation. This review will discuss current platelet imaging techniques in vitro and in vivo, describing how the advancements in imaging have helped answer/expand on some key biological questions regarding platelet aggregation and thrombus formation, how platelet imaging has enhanced our understanding of key events in thrombus formation, highlighting current knowledge that has been advanced as researchers have applied both in vitro and in vivo imaging techniques. We will review the limitations of current imaging techniques, and questions in thrombosis research that remain to be addressed.

Verified
Journal Article
Open access
PDF file
YMYuanqing Ma
Yuanqing Ma
YLYean Jin Lim
Yean Jin Lim
ABAleš Benda
Aleš Benda
JLJieqiong Lou
Jieqiong Lou
JGJesse Goyette
Jesse Goyette
KGKatharina Gaus
Katharina Gaus
T cell activation is initiated when ligand binding to the T cell receptor (TCR) triggers intracellular phosphorylation of the TCR-CD3 complex. However, it remains unknown how biophysical properties of TCR engagement result in biochemical phosphorylation events. Here, we constructed an optogenetic tool that induces spatial clustering of ζ-chain in a light controlled manner. We showed that spatial clustering of the ζ-chain intracellular tail alone was sufficient to initialize T cell triggering including phosphorylation of ζ-chain, Zap70, PLCγ, ERK and initiated Ca2+ flux. In reconstituted COS-7 cells, only Lck expression was required to initiate ζ-chain phosphorylation upon ζ-chain clustering, which leads to the recruitment of tandem SH2 domain of Zap70 from cell cytosol to the newly formed ζ-chain clusters at the plasma membrane. Taken together, our data demonstrated the biophysical relevance of receptor clustering in TCR signaling.

26 December 2018 in Biochemistry
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Journal Article
Closed access
YLYean Jin Lim
Yean Jin Lim
TFTimothy C. Foo
Timothy C. Foo
AYAmanda W. S. Yeung
Amanda W. S. Yeung
XTXiaofan Tu
Xiaofan Tu
YMYuanqing Ma
Yuanqing Ma
STShane R. Thomas
Shane R. Thomas

23 January 2020 in Biomedical Optics Express
Verified
Journal Article
Closed access
YLYongxiao Li
Yongxiao Li
YLYean Jin Lim
Yean Jin Lim
QXQiongkai Xu
Qiongkai Xu
LBLynette Beattie
Lynette Beattie
EGElizabeth E. Gardiner
Elizabeth E. Gardiner
DLDaniel Lim
Daniel Lim
Removal of complex aberrations at millisecond time scales over millimeters in distance in multiphoton laser scanning microscopy limits the total spatiotemporal imaging throughput for deep tissue imaging. Using a single low resolution deformable mirror and time multiplexing (TM) adaptive optics, we demonstrate video rate aberration correction (5 ms update rate for a single wavefront mask) for a complex heterogeneous distribution of refractive index differences through a depth of up to 1.1 mm and an extended imaging FOV of up to 0.8 mm, with up to 167% recovery of fluorescence intensity 335 µm from the center of the FOV. The proposed approach, termed raster adaptive optics (RAO), integrates image-based aberration retrieval and video rate removal of arbitrarily defined regions of dominant, spatially varied wavefronts. The extended FOV was achieved by demonstrating rapid recovery of up to 50 distinct wavefront masks at 500 ms update rates that increased imaging throughput by 2.3-fold. Because RAO only requires a single deformable mirror with image-based aberration retrieval, it can be directly implemented on a standard laser scanning multiphoton microscope.

14 November 2022 in ACS Photonics
Verified
Journal Article
Closed access
YZYujie Zheng
Yujie Zheng
YLYean Jin Lim
Yean Jin Lim
HLHanqi Lin
Hanqi Lin
TXTienan Xu
Tienan Xu
CLCarmen Longbottom
Carmen Longbottom
WLWoei Ming Lee
Woei Ming Lee