David Coomes

Dr. David Coomes


Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 December 2019 in Global Change Biology
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Journal Article
Open access
JKJens Kattge
Jens Kattge
GBGerhard Bönisch
Gerhard Bönisch
SDSandra Díaz
Sandra Díaz
SLSandra Lavorel
Sandra Lavorel
IPIain Colin Prentice
Iain Colin Prentice
CWChristian Wirth
Christian Wirth
Plant traits—the morphological, anatomical, physiological, biochemical and phenological characteristics of plants—determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait‐based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits—almost complete coverage for ‘plant growth form’. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait–environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives.

15 May 2020 in Science
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Journal Article
Closed access
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FZFlorian Zellweger
Florian Zellweger
PFPieter De Frenne
Pieter De Frenne
JLJonathan Lenoir
Jonathan Lenoir
PVPieter Vangansbeke
Pieter Vangansbeke
KVKris Verheyen
Kris Verheyen
DCDavid Coomes
David Coomes
Local factors restrain forest warming: Microclimates are key to understanding how organisms and ecosystems respond to macroclimate change, yet they are frequently neglected when studying biotic responses to global change. Zellweger et al. provide a long-term, continental-scale assessment of the effects of micro- and macroclimate on the community composition of European forests (see the Perspective by Lembrechts and Nijs). They show that changes in forest canopy cover are fundamentally important for driving community responses to climate change. Closed canopies buffer against the effects of macroclimatic change through their cooling effect, slowing shifts in community composition, whereas open canopies tend to accelerate community change through local heating effects. Science , this issue p. 772 ; see also p. 711

14 February 2013 in PLOS ONE
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Journal Article
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MSMindy M. Syfert
Mindy M. Syfert
MSMatthew J. Smith
Matthew J. Smith
DCDavid Coomes
David Coomes
Species distribution models (SDMs) trained on presence-only data are frequently used in ecological research and conservation planning. However, users of SDM software are faced with a variety of options, and it is not always obvious how selecting one option over another will affect model performance. Working with MaxEnt software and with tree fern presence data from New Zealand, we assessed whether (a) choosing to correct for geographical sampling bias and (b) using complex environmental response curves have strong effects on goodness of fit. SDMs were trained on tree fern data, obtained from an online biodiversity data portal, with two sources that differed in size and geographical sampling bias: a small, widely-distributed set of herbarium specimens and a large, spatially clustered set of ecological survey records. We attempted to correct for geographical sampling bias by incorporating sampling bias grids in the SDMs, created from all georeferenced vascular plants in the datasets, and explored model complexity issues by fitting a wide variety of environmental response curves (known as “feature types” in MaxEnt). In each case, goodness of fit was assessed by comparing predicted range maps with tree fern presences and absences using an independent national dataset to validate the SDMs. We found that correcting for geographical sampling bias led to major improvements in goodness of fit, but did not entirely resolve the problem: predictions made with clustered ecological data were inferior to those made with the herbarium dataset, even after sampling bias correction. We also found that the choice of feature type had negligible effects on predictive performance, indicating that simple feature types may be sufficient once sampling bias is accounted for. Our study emphasizes the importance of reducing geographical sampling bias, where possible, in datasets used to train SDMs, and the effectiveness and essentialness of sampling bias correction within MaxEnt.

13 November 2023 in Nature
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Journal Article
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LMLidong Mo
Lidong Mo
CZConstantin M. Zohner
Constantin M. Zohner
PRPeter B. Reich
Peter B. Reich
JLJingjing Liang
Jingjing Liang
Sergio de MiguelSergio de Miguel
Sergio de Miguel
TCThomas W. Crowther
Thomas W. Crowther
Forests are a substantial terrestrial carbon sink, but anthropogenic changes in land use and climate have considerably reduced the scale of this system1. Remote-sensing estimates to quantify carbon losses from global forests2–5 are characterized by considerable uncertainty and we lack a comprehensive ground-sourced evaluation to benchmark these estimates. Here we combine several ground-sourced6 and satellite-derived approaches2,7,8 to evaluate the scale of the global forest carbon potential outside agricultural and urban lands. Despite regional variation, the predictions demonstrated remarkable consistency at a global scale, with only a 12% difference between the ground-sourced and satellite-derived estimates. At present, global forest carbon storage is markedly under the natural potential, with a total deficit of 226 Gt (model range = 151–363 Gt) in areas with low human footprint. Most (61%, 139 Gt C) of this potential is in areas with existing forests, in which ecosystem protection can allow forests to recover to maturity. The remaining 39% (87 Gt C) of potential lies in regions in which forests have been removed or fragmented. Although forests cannot be a substitute for emissions reductions, our results support the idea2,3,9 that the conservation, restoration and sustainable management of diverse forests offer valuable contributions to meeting global climate and biodiversity targets.

30 July 2007 in Journal of Ecology
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Journal Article
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DCDavid Coomes
David Coomes
RARobert B. Allen
Robert B. Allen
1 Understanding the factors influencing tree growth is central to forest ecology because of the significance of growth to forest structure and biomass. One of the simplest, yet most controversial growth models, proposed by Enquist and colleagues, predicts that stem-diameter growth scales as the one-third power of stem diameter. Recent analyses of large-scale data sets have challenged the generality of this theory and highlighted the influence of resource competition on the scaling of growth with size. 2 Here we explore the factors regulating the diameter growth of 3334 trees of mountain beech (Nothofagus solandri var. cliffortioides) growing in natural single-species forests in New Zealand. Maximum-likelihood modelling was used to quantify the influences of tree size, altitude, the basal area of taller neighbours (BL) and the basal area of all neighbours (BT) on growth. Our interpretation of the models assumed that taller neighbours compete for light whereas all neighbours compete for nutrients. 3 The regression analyses indicate that competition for light has a strong influence on the growth of small trees, whereas competition for nutrients affects trees of all sizes. These findings are consistent with experimental manipulation studies showing that competition for light and nutrients inhibits the growth of small mountain beech trees, and fertilizer application studies showing that nitrogen limits the growth of large trees. 4 Tree growth declined with altitude. The regression analyses suggest that the intensity of light competition also declines with altitude, when trees with similar BT and BL values were compared along the gradient. These results are consistent with observations that trees become stunted and have more open canopies at high altitudes. 5 Our study is the first to build the effects of competition and environment into Enquist's model of tree growth. We show that competitive interactions alter the scaling of mean growth rate with size, whereas altitude does not influence the scaling of potential growth rate with size.

10 March 2015 in Functional Ecology
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Journal Article
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TJTommaso Jucker
Tommaso Jucker
Olivier BouriaudOlivier Bouriaud
Olivier Bouriaud
DCDavid Coomes
David Coomes