Alfonso De Simone

Prof. Dr. Alfonso De Simone

orcid

Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 December 2017 in Science
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Journal Article
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Giuliana FuscoGiuliana Fusco
Giuliana Fusco
SCSerene W. Chen
Serene W. Chen
PWPhilip T.F. Williamson
Philip T.F. Williamson
RCRoberta Cascella
Roberta Cascella
MPMichele Perni
Michele Perni
ASAlfonso De Simone
Alfonso De Simone
A structural look at α-synuclein oligomers: Fibrillar aggregates of the protein α-synuclein (αS) are the major constituents of Lewy bodies in Parkinson's disease. However, small oligomers that accumulate during the process of fibril formation are thought to cause the neuronal toxicity associated with the onset and progression of Parkinson's disease. Little is known about the detailed structural properties of αS oligomers and the molecular mechanisms that lead to their toxicity. Fusco et al. report the structural characterization of two forms of αS oligomers, which elucidates the fundamental structural elements giving rise to neuronal toxicity. Science , this issue p. 1440

19 March 2015 in Chemical Reviews
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Journal Article
Closed access
JNJessica Nasica-Labouze
Jessica Nasica-Labouze
PNPhuong H. Nguyen
Phuong H. Nguyen
FSFabio Sterpone
Fabio Sterpone
OBOlivia Berthoumieu
Olivia Berthoumieu
NBNicolae-Viorel Buchete
Nicolae-Viorel Buchete
PDPhilippe Derreumaux
Philippe Derreumaux

10 September 2012 in Journal of the American Chemical Society
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Journal Article
Closed access
FBFrank Biedermann
Frank Biedermann
VUVanya D. Uzunova
Vanya D. Uzunova
OSOren A. Scherman
Oren A. Scherman
WNWerner M. Nau
Werner M. Nau
ASAlfonso De Simone
Alfonso De Simone

29 May 2014 in Nature Communications
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Journal Article
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GFGiuliana Fusco
Giuliana Fusco
ASAlfonso De Simone
Alfonso De Simone
TGTata Gopinath
Tata Gopinath
VVVitaly Vostrikov
Vitaly Vostrikov
Michele VendruscoloMichele Vendruscolo
Michele Vendruscolo
GVGianluigi Veglia
Gianluigi Veglia
α-synuclein (αS) is a protein involved in neurotransmitter release in presynaptic terminals, and whose aberrant aggregation is associated with Parkinson’s disease. In dopaminergic neurons, αS exists in a tightly regulated equilibrium between water-soluble and membrane-associated forms. Here we use a combination of solid-state and solution NMR spectroscopy to characterize the conformations of αS bound to lipid membranes mimicking the composition and physical properties of synaptic vesicles. The study shows three αS regions possessing distinct structural and dynamical properties, including an N-terminal helical segment having a role of membrane anchor, an unstructured C-terminal region that is weakly associated with the membrane and a central region acting as a sensor of the lipid properties and determining the affinity of αS membrane binding. Taken together, our data define the nature of the interactions of αS with biological membranes and provide insights into their roles in the function of this protein and in the molecular processes leading to its aggregation.

19 September 2016 in Nature Communications
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Journal Article
Open access
GFGiuliana Fusco
Giuliana Fusco
TPTillmann Pape
Tillmann Pape
ASAmberley D Stephens
Amberley D Stephens
PMPierre Mahou
Pierre Mahou
ACAna Rita Costa
Ana Rita Costa
ASAlfonso De Simone
Alfonso De Simone
α-synuclein (αS) is an intrinsically disordered protein whose fibrillar aggregates are the major constituents of Lewy bodies in Parkinson’s disease. Although the specific function of αS is still unclear, a general consensus is forming that it has a key role in regulating the process of neurotransmitter release, which is associated with the mediation of synaptic vesicle interactions and assembly. Here we report the analysis of wild-type αS and two mutational variants linked to familial Parkinson’s disease to describe the structural basis of a molecular mechanism enabling αS to induce the clustering of synaptic vesicles. We provide support for this ‘double-anchor’ mechanism by rationally designing and experimentally testing a further mutational variant of αS engineered to promote stronger interactions between synaptic vesicles. Our results characterize the nature of the active conformations of αS that mediate the clustering of synaptic vesicles, and indicate their relevance in both functional and pathological contexts.

6 November 2020 in Science Advances
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GHGabriella T. Heller
Gabriella T. Heller
FAFrancesco Antonio Aprile
Francesco Antonio Aprile
TMThomas C.T. Michaels
Thomas C.T. Michaels
Ryan LimbockerRyan Limbocker
Ryan Limbocker
MPMichele Perni
Michele Perni
Michele VendruscoloMichele Vendruscolo
Michele Vendruscolo
Disordered proteins are challenging therapeutic targets, and no drug is currently in clinical use that modifies the properties of their monomeric states. Here, we identify a small molecule (10074-G5) capable of binding and sequestering the intrinsically disordered amyloid-β (Aβ) peptide in its monomeric, soluble state. Our analysis reveals that this compound interacts with Aβ and inhibits both the primary and secondary nucleation pathways in its aggregation process. We characterize this interaction using biophysical experiments and integrative structural ensemble determination methods. We observe that this molecule increases the conformational entropy of monomeric Aβ while decreasing its hydrophobic surface area. We also show that it rescues a Caenorhabditis elegans model of Aβ-associated toxicity, consistent with the mechanism of action identified from the in silico and in vitro studies. These results illustrate the strategy of stabilizing the monomeric states of disordered proteins with small molecules to alter their behavior for therapeutic purposes.