Anindya Bandyopadhyay

Dr. Anindya Bandyopadhyay


Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 November 2020 in Frontiers in Plant Science
Verified
Journal Article
Open access
PDF file
ABAnindya Bandyopadhyay
Anindya Bandyopadhyay
NKNagesh Kancharla
Nagesh Kancharla
VJVivek S. Javalkote
Vivek S. Javalkote
SDSantanu Dasgupta
Santanu Dasgupta
TBThomas P. Brutnell
Thomas P. Brutnell
Global population is predicted to approach 10 billion by 2050, an increase of over 2 billion from today. To meet the demands of growing, geographically and socio-economically diversified nations, we need to diversity and expand agricultural production. This expansion of agricultural productivity will need to occur under increasing biotic, and environmental constraints driven by climate change. Clustered regularly interspaced short palindromic repeats-site directed nucleases (CRISPR-SDN) and similar genome editing technologies will likely be key enablers to meet future agricultural needs. While the application of CRISPR-Cas9 mediated genome editing has led the way, the use of CRISPR-Cas12a is also increasing significantly for genome engineering of plants. The popularity of the CRISPR-Cas12a, the type V (class-II) system, is gaining momentum because of its versatility and simplified features. These include the use of a small guide RNA devoid of trans-activating crispr RNA, targeting of T-rich regions of the genome where Cas9 is not suitable for use, RNA processing capability facilitating simpler multiplexing, and its ability to generate double strand breaks (DSB) with staggered ends. Many monocot and dicot species have been successfully edited using this Cas12a system and further research is ongoing to improve its efficiency in plants, including improving the temperature stability of the Cas12a enzyme, identifying new variants of Cas12a or synthetically producing Cas12a with flexible PAM sequences. In this review we provide a comparative survey of CRISPR-Cas12a and Cas9, and provide a perspective on applications of CRISPR-Cas12 in agriculture.

1 July 2022 in Methods
Verified
Journal Article
Closed access
VJVivek S. Javalkote
Vivek S. Javalkote
NKNagesh Kancharla
Nagesh Kancharla
BBBhaskar Bhadra
Bhaskar Bhadra
MSManish Shukla
Manish Shukla
BSBadrish Soni
Badrish Soni
SDSantanu Dasgupta
Santanu Dasgupta

30 December 2021 in Molecules
Verified
Journal Article
Open access
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Luis Alberto Bravo-VázquezLuis Alberto Bravo-Vázquez
Luis Alberto Bravo-Vázquez
MBMariana Yunuen Moreno Becerril
Mariana Yunuen Moreno Becerril
EHErick Octavio Mora Hernández
Erick Octavio Mora Hernández
GCGabriela García de León Carmona
Gabriela García de León Carmona
MPMaría Emilia Aguirre Padilla
María Emilia Aguirre Padilla
SPSujay Paul
Sujay Paul
MicroRNAs (miRNAs) are a class of small (20–24 nucleotides), highly conserved, non-coding RNA molecules whose main function is the post-transcriptional regulation of gene expression through sequence-specific manners, such as mRNA degradation or translational repression. Since these key regulatory molecules are implicated in several biological processes, their altered expression affects the preservation of cellular homeostasis and leads to the development of a wide range of pathologies. Over the last few years, relevant investigations have elucidated that miRNAs participate in different stages of bone growth and development. Moreover, the abnormal expression of these RNA molecules in bone cells and tissues has been significantly associated with the progression of numerous bone diseases, including osteoporosis, osteosarcoma, osteonecrosis and bone metastasis, among others. In fact, miRNAs regulate multiple pathological mechanisms, including altering either osteogenic or osteoblast differentiation, metastasis, osteosarcoma cell proliferation, and bone loss. Therefore, in this present review, aiming to impulse the research arena of the biological implications of miRNA transcriptome in bone diseases and to explore their potentiality as a theragnostic target, we summarize the recent findings associated with the clinical significance of miRNAs in these ailments.

28 December 2023 in Planta
Verified
Journal Article
Closed access
PDF file
LBLuis Alberto Bravo-Vázquez
Luis Alberto Bravo-Vázquez
AGAndrea Méndez García
Andrea Méndez García
VCVerenice Chamu-García
Verenice Chamu-García
ARAlma L. Rodríguez
Alma L. Rodríguez
ABAnindya Bandyopadhyay
Anindya Bandyopadhyay
SPSujay Paul
Sujay Paul

22 January 2022 in Genes
Verified
Journal Article
Open access
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LRLuis Mario Ruiz-Manriquez
Luis Mario Ruiz-Manriquez
SPSchoenstatt Janin Ledesma Pacheco
Schoenstatt Janin Ledesma Pacheco
DMDaniel Medina-Gomez
Daniel Medina-Gomez
AUAndrea Georgina Uriostegui-Pena
Andrea Georgina Uriostegui-Pena
CECarolina Estrada-Meza
Carolina Estrada-Meza
SPSujay Paul
Sujay Paul
MiRNAs are small endogenous conserved non-coding RNA molecules that regulate post-transcriptional gene expression through mRNA degradation or translational inhibition, modulating nearly 60% of human genes. Cystic diseases are characterized by the presence of abnormal fluid-filled sacs in the body, and though most cysts are benign, they can grow inside tumors and turn malignant. Recent evidence has revealed that the aberrant expression of a number of miRNAs present in extracellular fluids, including plasma or serum, urine, saliva, follicular fluid, and semen, contribute to different cystic pathologies. This review aims to describe the role of different miRNAs in three worldwide relevant cystic diseases: polycystic ovarian syndrome (PCOS), polycystic kidney disease (PKD), and pancreatic cyst tumors (PCTs), as well as their potential use as novel biomarkers.

20 February 2023 in Pharmaceutics
Verified
Journal Article
Open access
PDF file
Luis Alberto Bravo-VázquezLuis Alberto Bravo-Vázquez
Luis Alberto Bravo-Vázquez
EHErick Octavio Mora Hernández
Erick Octavio Mora Hernández
Alma Lorena Rodriguez CurielAlma Lorena Rodriguez Curiel
Alma Lorena Rodriguez Curiel
PSPadmavati Sahare
Padmavati Sahare
ABAnindya Bandyopadhyay
Anindya Bandyopadhyay
SPSujay Paul
Sujay Paul
Neurodegenerative diseases (NDDs) are characterized by the progressive degeneration and/or loss of neurons belonging to the central nervous system, and represent one of the major global health issues. Therefore, a number of immunotherapeutic approaches targeting the non-functional or toxic proteins that induce neurodegeneration in NDDs have been designed in the last decades. In this context, due to unprecedented advances in genetic engineering techniques and molecular farming technology, pioneering plant-based immunogenic antigen expression systems have been developed aiming to offer reliable alternatives to deal with important NDDs, including Alzheimer’s disease, Parkinson’s disease, and multiple sclerosis. Diverse reports have evidenced that plant-made vaccines trigger significant immune responses in model animals, supported by the production of antibodies against the aberrant proteins expressed in the aforementioned NDDs. Moreover, these immunogenic tools have various advantages that make them a viable alternative for preventing and treating NDDs, such as high scalability, no risk of contamination with human pathogens, cold chain free production, and lower production costs. Hence, this article presents an overview of the current progress on plant-manufactured vaccines for NDDs and discusses its future prospects.