Building on our ability to design and synthesise molecules and our understanding of the noncovalent interactions between these molecules, the chemical sciences are currently entering the new territory of Systems Chemistry. This young field aims to develop complex molecular systems showing emergent properties; i.e. properties that go beyond the sum of the characteristics of the individual consituents of the system. This review gives an impression of the state of the art of the field by showing a diverse number of recent highlights, including out-of-equilibrium self-assembly, chemically fuelled molecular motion, compartmentalised chemical networks and designed oscillators. Subsequently a number of current challenges related to the design of complex chemical systems are discussed, including those of creating concurrent formation–destruction systems, continuously maintaining chemical systems away from equilibrium, incorporating feedback loops and pushing replication chemistry away from equilibrium. Finally, the prospects for Systems Chemistry are discussed including the tantalizing vision of the de novo synthesis of life and the idea of self-synthesising and self-repairing chemical factories.

The study of complex mixtures of interacting synthetic molecules has historically not received much attention from chemists, even though research into complexity is well established in the neighbouring fields. However, with the huge recent interest in systems biology and the availability of modern analytical techniques this situation is likely to change. In this tutorial review we discuss some of the incentives for developing systems chemistry and we highlight the pioneering work in which molecular networks are making a splash. A distinction is made between networks under thermodynamic and kinetic control. The former include dynamic combinatorial libraries while the latter involve pseudo-dynamic combinatorial libraries, oscillating reactions and networks of autocatalytic and replicating compounds. These studies provide fundamental insights into the organisational principles of molecular networks and how these give rise to emergent properties such as amplification and feedback loops, and may eventually shed light on the origin of life. The knowledge obtained from the study of molecular networks should ultimately enable us to engineer new systems with properties and functions unlike any conventional materials.

At Sixes and Sevens: Molecular synthesis and macroscopic aggregation have often been regarded as entirely separate processes. From the researcher's standpoint, once reagents have been mixed, synthesis is largely passive, whereas processes such as crystallization can be more actively manipulated. Carnall et al. (p. 1502 ) characterized an unusual system in which the formation of aggregated cyclic macromolecules (macrocycles) from small peptide-based building blocks was governed by intimately interdependent factors ranging from the scale of covalent bond formation all the way to micron scale fiber growth. As the macrocycles stacked against one another to form the fibers, they remained loosely bonded enough internally to incorporate or expel individual building blocks. Varying the type of mechanical force applied to the growing fibers (either through shaking or stirring the solution), alternately favored formation of either 6-membered or 7-membered covalent macrocycles.