Abbas Atefi

Dr. Abbas Atefi

University of Nebraska-Lincoln
orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 June 2019 in Plant Methods
Verified
Journal Article
Open access
PDF file
Yufeng GeYufeng Ge
Yufeng Ge
Abbas AtefiAbbas Atefi
Abbas Atefi
HZHuichun Zhang
Huichun Zhang
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RRRaghuprakash Kastoori Ramamurthy
Raghuprakash Kastoori Ramamurthy
JSJames C. Schnable
James C. Schnable
Hyperspectral reflectance data in the visible, near infrared and shortwave infrared range (VIS–NIR–SWIR, 400–2500 nm) are commonly used to nondestructively measure plant leaf properties. We investigated the usefulness of VIS–NIR–SWIR as a high-throughput tool to measure six leaf properties of maize plants including chlorophyll content (CHL), leaf water content (LWC), specific leaf area (SLA), nitrogen (N), phosphorus (P), and potassium (K). This assessment was performed using the lines of the maize diversity panel. Data were collected from plants grown in greenhouse condition, as well as in the field under two nitrogen application regimes. Leaf-level hyperspectral data were collected with a VIS–NIR–SWIR spectroradiometer at tasseling. Two multivariate modeling approaches, partial least squares regression (PLSR) and support vector regression (SVR), were employed to estimate the leaf properties from hyperspectral data. Several common vegetation indices (VIs: GNDVI, RENDVI, and NDWI), which were calculated from hyperspectral data, were also assessed to estimate these leaf properties. Some VIs were able to estimate CHL and N (R2 > 0.68), but failed to estimate the other four leaf properties. Models developed with PLSR and SVR exhibited comparable performance to each other, and provided improved accuracy relative to VI models. CHL were estimated most successfully, with R2 (coefficient of determination) > 0.94 and ratio of performance to deviation (RPD) > 4.0. N was also predicted satisfactorily (R2 > 0.85 and RPD > 2.6). LWC, SLA and K were predicted moderately well, with R2 ranging from 0.54 to 0.70 and RPD from 1.5 to 1.8. The lowest prediction accuracy was for P, with R2 < 0.5 and RPD < 1.4. This study showed that VIS–NIR–SWIR reflectance spectroscopy is a promising tool for low-cost, nondestructive, and high-throughput analysis of a number of leaf physiological and biochemical properties. Full-spectrum based modeling approaches (PLSR and SVR) led to more accurate prediction models compared to VI-based methods. We called for the construction of a leaf VIS–NIR–SWIR spectral library that would greatly benefit the plant phenotyping community for the research of plant leaf traits.

1 August 2019 in Computers and Electronics in Agriculture
Verified
Journal Article
Closed access
Abbas AtefiAbbas Atefi
Abbas Atefi
YGYufeng Ge
Yufeng Ge
SPSantosh Pitla
Santosh Pitla
JSJames Schnable
James Schnable

28 July 2020 in Robotics
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Journal Article
Open access
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Abbas AtefiAbbas Atefi
Abbas Atefi
Yufeng GeYufeng Ge
Yufeng Ge
SPSantosh Pitla
Santosh Pitla
JSJames Schnable
James Schnable
Frequent measurements of the plant phenotypes make it possible to monitor plant status during the growing season. Stem diameter is an important proxy for overall plant biomass and health. However, the manual measurement of stem diameter in plants is time consuming, error prone, and laborious. The use of agricultural robots to automatically collect plant phenotypic data for trait measurements can overcome many of the drawbacks of manual phenotyping. The objective of this research was to develop a robotic system that can automatically detect and grasp the stem, and measure its diameter of maize and sorghum plants. The robotic system comprises of a four degree of freedom robotic manipulator, a time-of-flight camera for vision system, and a linear potentiometer sensor to measure the stem diameter. Deep learning and conventional image processing were used to detect stem in images and find grasping point of stem, respectively. An experiment was conducted in a greenhouse using maize and sorghum plants to evaluate the performance of the robotic system. The system demonstrated successful grasping of stem and a high correlation between manual and robotic measurements of diameter depicting its ability to be used as a prototype to integrate other sensors to measure different physiological and chemical attributes of the stem.

1 April 2021 in Research on Animal Production
Verified
Journal Article
Open access
Abbas AtefiAbbas Atefi
Abbas Atefi
GAGivi City Ministry Of Agriculture-Jahad
Givi City Ministry Of Agriculture-Jahad