In this study, amorphous manganese oxide (MnO₂) nanostructured thin films were synthesized by a simple hydrothermal method. It is well known that the nanostructure plays a crucial role in energy storage applications. Herein, MnO₂ nanostructures ranging from plates to flakes were synthesized without the use of any hard or soft templates. The 4+ oxidation state of Mn was confirmed by X-ray photoelectron spectroscopy. The MnO₂ nanoflake structure has a specific surface area of 46 m²g⁻¹, which provides it with an excellent rate capability and an exactly rectangular cyclic voltammogram (CV) curve. The MnO₂ nanoflake electrode has a high specific capacitance of about 433 Fg⁻¹, an energy density of 60 Whkg⁻¹ at 0.5 mAcm⁻², and an excellent cyclic stability of 95% over 1000 CV cycles in 1 M aq. Na₂SO₄. Kinetics analysis of the charge storage in the nanoflake MnO₂ sample shows a 55.6% diffusion-controlled contribution and 44.4% capacitive-controlled contribution to the total current calculated at a scan rate of 100 mVs⁻¹ from the CV curve.