Expressed sequence tags (EST) are potential source for the development of genic microsatellite markers, gene discovery, comparative genomics, and other genomic studies. In the present study, 7630 ESTs were examined from NCBI for SSR identification and characterization. A total of 263 SSRs were identified with an average density of one SSR/4.2 kb (3.4% frequency). Analysis revealed that trinucleotide repeats (47.52%) were most abundant followed by tetranucleotide (19.77%), dinucleotide (19.01%), pentanucleotide (9.12%), and hexanucleotide repeats (4.56%). Functional annotation was done through homology search and gene ontology, and 35 EST-SSRs were selected. Primer pairs were designed for evaluation of cross transferability and polymorphism among 11 plants belonging to five different families. Total 402 alleles were generated at 155 loci with an average of 2.6 alleles/locus and the polymorphic information content (PIC) ranged from 0.15 to 0.92 with an average of 0.75. The cross transferability ranged from 34.84% to 98.06% in different plants, with an average of 67.86%. Thus, the validation study of annotated 35 EST-SSR markers which correspond to particular metabolic activity revealed polymorphism and evolutionary nature in different families of Angiospermic plants.
13 March 2020 in In Vitro Cellular & Developmental Biology - Plant
An efficient protocol for synthesis of silver nanoparticles (AgNPs) using Xanthium strumerium L. leaves was developed. This study revealed that bioactive compounds present in the extract, function as stabilizing and capping agent for AgNPs. SEM, EDX, TEM and XRD studies confirm the structure, crystalline nature and surface morphology of the AgNPs. Size of synthesized AgNPs was in the range of 20–50 nm having spherical morphology. The AgNPs were found to be toxic against pathogenic bacteria such as Escherichia coli, Pseudomonas aeruginosa and Staphylococcus aureus. The use of AgNPs as antibacterial agent is advantageous over other methods for control of pathogenic microorganisms.