Rodrigo Aguayo-Ortiz

Dr. Rodrigo Aguayo-Ortiz

orcid

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 September 2013 in Journal of Molecular Graphics and Modelling
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Journal Article
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RARodrigo Aguayo-Ortiz
Rodrigo Aguayo-Ortiz
OMOscar Méndez-Lucio
Oscar Méndez-Lucio
Antonio Romo-MancillasAntonio Romo-Mancillas
Antonio Romo-Mancillas
RCRafael Castillo
Rafael Castillo
LYLilián Yépez-Mulia
Lilián Yépez-Mulia
AHAlicia Hernández-Campos
Alicia Hernández-Campos

Verified
Journal Article
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RARodrigo Aguayo-Ortiz
Rodrigo Aguayo-Ortiz
LEL. Michel Espinoza-Fonseca
L. Michel Espinoza-Fonseca
Sarcoendoplasmic reticulum calcium ATPase (SERCA), a member of the P-type ATPase family of ion and lipid pumps, is responsible for the active transport of Ca2+ from the cytoplasm into the sarcoplasmic reticulum lumen of muscle cells, into the endoplasmic reticulum (ER) of non-muscle cells. X-ray crystallography has proven to be an invaluable tool in understanding the structural changes of SERCA, and more than 70 SERCA crystal structures representing major biochemical states (defined by bound ligand) have been deposited in the Protein Data Bank. Consequently, SERCA is one of the best characterized components of the calcium transport machinery in the cell. Emerging approaches in the field, including spectroscopy and molecular simulation, now help integrate and interpret this rich structural information to understand the conformational transitions of SERCA that occur during activation, inhibition, and regulation. In this review, we provide an overview of the crystal structures of SERCA, focusing on identifying metrics that facilitate structure-based categorization of major steps along the catalytic cycle. We examine the integration of crystallographic data with different biophysical approaches and computational methods to link biochemical and structural states of SERCA that are populated in the cell. Finally, we discuss the challenges and new opportunities in the field, including structural elucidation of functionally important and novel regulatory complexes of SERCA, understanding the structural basis of functional divergence among homologous SERCA regulators, and bridging the gap between basic and translational research directed toward therapeutic modulation of SERCA.

1 April 2013 in Journal of Molecular Graphics and Modelling
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Journal Article
Closed access
RARodrigo Aguayo-Ortiz
Rodrigo Aguayo-Ortiz
OMOscar Méndez-Lucio
Oscar Méndez-Lucio
JMJosé L. Medina-Franco
José L. Medina-Franco
RCRafael Castillo
Rafael Castillo
LYLilián Yépez-Mulia
Lilián Yépez-Mulia
AHAlicia Hernández-Campos
Alicia Hernández-Campos

5 June 2017 in Chemical Science
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Journal Article
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RARodrigo Aguayo-Ortiz
Rodrigo Aguayo-Ortiz
CCCecilia Chávez-García
Cecilia Chávez-García
JSJohn E. Straub
John E. Straub
LDLaura Dominguez
Laura Dominguez
Employing a multiscale modeling approach, we characterized the structure and dynamics of the γ-secretase complex to elucidate its activation mechanism.

29 June 2015 in Journal of Enzyme Inhibition and Medicinal Chemistry
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FAFahad S. Aldawsari
Fahad S. Aldawsari
RARodrigo Aguayo-Ortiz
Rodrigo Aguayo-Ortiz
KKKanishk Kapilashrami
Kanishk Kapilashrami
JYJakyung Yoo
Jakyung Yoo
MLMinkui Luo
Minkui Luo
Carlos Alberto Velazquez-MartinezCarlos Alberto Velazquez-Martinez
Carlos Alberto Velazquez-Martinez
Resveratrol is a natural polyphenol with plethora of biological activities. Resveratrol has previously shown to decrease DNA-methyltransferase (DNMT) enzymes expression and to reactivate silenced tumor suppressor genes. Currently, it seems that no resveratrol analogs have been developed as DNMT inhibitors. Recently, we reported the synthesis of resveratrol-salicylate derivatives and by examining the chemical structure of these analogs, we proposed that these compounds could exhibit DNMT inhibition especially that they resembled NSC 14778, a compound we previously identified as a DNMT inhibitor by virtual screening. Indeed, using in vitro DNMT inhibition assay, some of the resveratrol-salicylate analogs we screened in this work that showed selective inhibition against DNMT3 enzymes which were greater than resveratrol. A molecular docking study revealed key binding interactions with DNMT3A and DNMT3B enzymes. In addition, the most active analog, 10 showed considerable cytotoxicity against three human cancer cells; HT-29, HepG2 and SK-BR-3, which was greater than resveratrol. Further studies are needed to understand the anticancer mechanisms of these derivatives.

1 November 2013 in European Journal of Medicinal Chemistry
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Journal Article
Closed access
EHEduardo Hernández-Vázquez
Eduardo Hernández-Vázquez
RARodrigo Aguayo-Ortiz
Rodrigo Aguayo-Ortiz
JRJuan José Ramírez-Espinosa
Juan José Ramírez-Espinosa
SESamuel Estrada-Soto
Samuel Estrada-Soto
FHFrancisco Hernández-Luis
Francisco Hernández-Luis