Julia Kubanek

Dr. Julia Kubanek

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Research Focus & Metrics

Academic Career Length

36Years (1991-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 October 2011 in Proceedings of the National Academy of Sciences
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DRDouglas B. Rasher
Douglas B. Rasher
ESE. Paige Stout
E. Paige Stout
SESebastian Engel
Sebastian Engel
Julia KubanekJulia Kubanek
Julia Kubanek
MHMark E. Hay
Mark E. Hay
During recent decades, many tropical reefs have transitioned from coral to macroalgal dominance. These community shifts increase the frequency of algal–coral interactions and may suppress coral recovery following both anthropogenic and natural disturbance. However, the extent to which macroalgae damage corals directly, the mechanisms involved, and the species specificity of algal–coral interactions remain uncertain. Here, we conducted field experiments demonstrating that numerous macroalgae directly damage corals by transfer of hydrophobic allelochemicals present on algal surfaces. These hydrophobic compounds caused bleaching, decreased photosynthesis, and occasionally death of corals in 79% of the 24 interactions assayed (three corals and eight algae). Coral damage generally was limited to sites of algal contact, but algae were unaffected by contact with corals. Artificial mimics for shading and abrasion produced no impact on corals, and effects of hydrophobic surface extracts from macroalgae paralleled effects of whole algae; both findings suggest that local effects are generated by allelochemical rather than physical mechanisms. Rankings of macroalgae from most to least allelopathic were similar across the three coral genera tested. However, corals varied markedly in susceptibility to allelopathic algae, with globally declining corals such as Acropora more strongly affected. Bioassay-guided fractionation of extracts from two allelopathic algae led to identification of two loliolide derivatives from the red alga Galaxaura filamentosa and two acetylated diterpenes from the green alga Chlorodesmis fastigiata as potent allelochemicals. Our results highlight a newly demonstrated but potentially widespread competitive mechanism to help explain the lack of coral recovery on many present-day reefs.

3 January 2012 in BMC Infectious Diseases
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Journal Article
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SCSerena Cervantes
Serena Cervantes
PSPaige E Stout
Paige E Stout
JPJacques Prudhomme
Jacques Prudhomme
SESebastian Engel
Sebastian Engel
MBMatthew Bruton
Matthew Bruton
KRKarine G Le Roch
Karine G Le Roch
Background: The human malaria parasite remains a burden in developing nations. It is responsible for up to one million deaths a year, a number that could rise due to increasing multi-drug resistance to all antimalarial drugs currently available. Therefore, there is an urgent need for the discovery of new drug therapies. Recently, our laboratory developed a simple one-step fluorescence-based live cell-imaging assay to integrate the complex biology of the human malaria parasite into drug discovery. Here we used our newly developed live cell-imaging platform to discover novel marine natural products and their cellular phenotypic effects against the most lethal malaria parasite, Plasmodium falciparum. Methods: A high content live cell imaging platform was used to screen marine extracts effects on malaria. Parasites were grown in vitro in the presence of extracts, stained with RNA sensitive dye, and imaged at timed intervals with the BD Pathway HT automated confocal microscope. Results: Image analysis validated our new methodology at a larger scale level and revealed potential antimalarial activity of selected extracts with a minimal cytotoxic effect on host red blood cells. To further validate our assay, we investigated parasite's phenotypes when incubated with the purified bioactive natural product bromophycolide A. We show that bromophycolide A has a strong and specific morphological effect on parasites, similar to the ones observed from the initial extracts. Conclusion: Collectively, our results show that high-content live cell-imaging (HCLCI) can be used to screen chemical libraries and identify parasite specific inhibitors with limited host cytotoxic effects. All together we provide new leads for the discovery of novel antimalarials.

19 May 2003 in Proceedings of the National Academy of Sciences
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Julia KubanekJulia Kubanek
Julia Kubanek
PJPaul Jensen
Paul Jensen
PKPaul A. Keifer
Paul A. Keifer
MSM. Cameron Sullards
M. Cameron Sullards
DCDwight O. Collins
Dwight O. Collins
WFWilliam Fenical
William Fenical
Pathogenic microbes can devastate populations of marine plants and animals. Yet, many sessile organisms such as seaweeds and sponges suffer remarkably low levels of microbial infection, despite lacking cell-based immune systems. Antimicrobial defenses of marine organisms are largely uncharacterized, although from a small number of studies it appears that chemical defenses may improve host resistance. In this study, we asked whether the common seaweed Lobophora variegata is chemically defended against potentially deleterious microorganisms. Using bioassay-guided fractionation, we isolated and characterized a 22-membered cyclic lactone, lobophorolide (1), of presumed polyketide origin, with sub-μM activity against pathogenic and saprophytic marine fungi. Deterrent concentrations of 1 were found in 46 of 51 samples collected from 10 locations in the Bahamas over a 4-year period. Lobophorolide (1) is structurally unprecedented, yet parts of the molecule are related to tolytoxin, the scytophycins, and the swinholides, macrolides previously isolated from terrestrial cyanobacteria and from marine sponges and gastropods. Until now, compounds of this structural class have not been associated with marine macrophytes. Our findings suggest that seaweeds use targeted antimicrobial chemical defense strategies and that secondary metabolites important in the ecological interactions between marine macroorganisms and microorganisms could be a promising source of novel bioactive compounds.

5 May 2009 in Proceedings of the National Academy of Sciences
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Journal Article
Closed access
ALAmy Lane
Amy Lane
LNLeonard Nyadong
Leonard Nyadong
AGAsiri S. Galhena
Asiri S. Galhena
TSTonya L. Shearer
Tonya L. Shearer
ESE. Paige Stout
E. Paige Stout
Julia KubanekJulia Kubanek
Julia Kubanek
Organism surfaces represent signaling sites for attraction of allies and defense against enemies. However, our understanding of these signals has been impeded by methodological limitations that have precluded direct fine-scale evaluation of compounds on native surfaces. Here, we asked whether natural products from the red macroalga Callophycus serratus act in surface-mediated defense against pathogenic microbes. Bromophycolides and callophycoic acids from algal extracts inhibited growth of Lindra thalassiae , a marine fungal pathogen, and represent the largest group of algal antifungal chemical defenses reported to date. Desorption electrospray ionization mass spectrometry (DESI-MS) imaging revealed that surface-associated bromophycolides were found exclusively in association with distinct surface patches at concentrations sufficient for fungal inhibition; DESI-MS also indicated the presence of bromophycolides within internal algal tissue. This is among the first examples of natural product imaging on biological surfaces, suggesting the importance of secondary metabolites in localized ecological interactions, and illustrating the potential of DESI-MS in understanding chemically-mediated biological processes.

27 April 2015 in Proceedings of the National Academy of Sciences
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ESErik Selander
Erik Selander
Julia KubanekJulia Kubanek
Julia Kubanek
MHMats Hamberg
Mats Hamberg
MAMats X. Andersson
Mats X. Andersson
GCGunnar Cervin
Gunnar Cervin
HPHenrik Pavia
Henrik Pavia
Interactions among microscopic planktonic organisms underpin the functioning of open ocean ecosystems. With few exceptions, these organisms lack advanced eyes and thus rely largely on chemical sensing to perceive their surroundings. However, few of the signaling molecules involved in interactions among marine plankton have been identified. We report a group of eight small molecules released by copepods, the most abundant zooplankton in the sea, which play a central role in food webs and biogeochemical cycles. The compounds, named copepodamides, are polar lipids connecting taurine via an amide to isoprenoid fatty acid conjugate of varying composition. The bloom-forming dinoflagellate Alexandrium minutum responds to pico- to nanomolar concentrations of copepodamides with up to a 20-fold increase in production of paralytic shellfish toxins. Different copepod species exude distinct copepodamide blends that contribute to the species-specific defensive responses observed in phytoplankton. The signaling system described here has far reaching implications for marine ecosystems by redirecting grazing pressure and facilitating the formation of large scale harmful algal blooms. Significance We report the chemical basis for a critical question in ocean science: how do single-celled algae, which are responsible for almost half of Earth9s photosynthesis, sense their environment to respond appropriately to the lethal threat of predation? The increasing frequency of toxic algal blooms, with worldwide consequences to human health, fisheries, and marine ecosystem functioning, has garnered much attention in recent years, but it has remained unclear how algal toxicity is regulated. With the current paper, we show that substantial (20×) induction of toxicity occurs when one species of algae is exposed to a family of previously unknown chemical cues from predatory zooplankton (copepods). The copepodamides represent the first discovery, to our knowledge, of chemical cues mediating interactions between marine zooplankton and their prey.

1 November 2006 in Ecology
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Journal Article
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DBDeron E. Burkepile
Deron E. Burkepile
JPJohn D. Parker
John D. Parker
CWC. Brock Woodson
C. Brock Woodson
HMHeath J. Mills
Heath J. Mills
Julia KubanekJulia Kubanek
Julia Kubanek
MHMark E. Hay
Mark E. Hay
Microbes are known to affect ecosystems and communities as decomposers, pathogens, and mutualists. However, they also may function as classic consumers and competitors with animals if they chemically deter larger consumers from using rich food‐falls such as carrion, fruits, and seeds that can represent critical windfalls to both microbes and animals. Microbes often use chemicals (i.e., antibiotics) to compete against other microbes. Thus using chemicals against larger competitors might be expected and could redirect significant energy subsidies from upper trophic levels to the detrital pathway. When we baited traps in a coastal marine ecosystem with fresh vs. microbe‐laden fish carrion, fresh carrion attracted 2.6 times as many animals per trap as microbe‐laden carrion. This resulted from fresh carrion being found more frequently and from attracting more animals when found. Microbe‐laden carrion was four times more likely to be uncolonized by large consumers than was fresh carrion. In the lab, the most common animal found in our traps (the stone crab Menippe mercenaria) ate fresh carrion 2.4 times more frequently than microbe‐laden carrion. Bacteria‐removal experiments and feeding bioassays using organic extracts of microbe‐laden carrion showed that bacteria produced noxious chemicals that deterred animal consumers. Thus bacteria compete with large animal scavengers by rendering carcasses chemically repugnant. Because food‐fall resources such as carrion are major food subsidies in many ecosystems, chemically mediated competition between microbes and animals could be an important, common, but underappreciated interaction within many communities.