With an increase in the global population, a protein-rich crop like soybean can help manage food insecurity in sub-Saharan Africa (SSA). The expansion of soybean production in recent years lead to increased land requirements for growing the crop and the increased risk of exposing this valuable crop to various pests and diseases. Of these pests, plant-parasitic nematodes (PPN), especially Meloidogyne and Pratylenchus spp., are of great concern. The increase in the population densities of these nematodes can cause significant damage to soybean. Furthermore, the use of crop rotation and cultivars (cvs.) with genetic resistance traits might not be effective for Meloidogyne and Pratylenchus control. This review builds on a previous study and focuses on the current nematode threat facing local soybean production, while probing into possible biological control options that still need to be studied in more detail. As soybean is produced on a global scale, the information generated by local and international researchers is needed. This will address the problem of the current global food demand, which is a matter of pressing importance for developing countries, such as those in sub-Saharan Africa.

Soybean is among South Africa’s top crops in terms of production figures. Over the past few years there has been increasingly more damage caused to local soybean by plant-parasitic nematode infections. The presence of Meloidogyne (root-knot nematodes) and Pratylenchus spp. (root lesion nematodes) in soybean fields can cripple the country’s production, however, little is known about the soil microbial communities associated with soybean in relation to different levels of Meloidogyne and Pratylenchus infestations, as well as the interaction(s) between them. Therefore, this study aimed to identify the nematode population assemblages and endemic rhizosphere bacteria associated with soybean using Next Generation Sequencing (NGS). The abundance of bacterial genera that were then identified as being significant using linear discriminant analysis (LDA) Effect Size (LEfSe) was compared to the abundance of the most prevalent plant-parasitic nematode genera found across all sampled sites, viz. Meloidogyne and Pratylenchus. While several bacterial genera were identified as significant using LEfSe, only two with increased abundance were associated with decreased abundance of Meloidogyne and Pratylenchus. However, six bacterial genera were associated with decreased Pratylenchus abundance. It is therefore possible that endemic bacterial strains can serve as an alternative method for reducing densities of plant-parasitic nematode genera and in this way reduce the damages caused to this economically important crop.