Mark Denham

Dr. Mark Denham

1. Department of Biomedicine, Aarhus University, 8000C Aarhus, Denmark; 2. Danish Research Institute of Translational Neuroscience, Nordic EMBL Partnership for Molecular Medicine, Aarhus University, 8000C Aarhus, Denmark

Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 June 2015 in Development
Verified
Journal Article
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EAErnest Arenas
Ernest Arenas
Mark DenhamMark Denham
Mark Denham
J. Carlos VillaescusaJ. Carlos Villaescusa
J. Carlos Villaescusa
Midbrain dopaminergic (mDA) neuron development has been an intense area of research during recent years. This is due in part to a growing interest in regenerative medicine and the hope that treatment for diseases affecting mDA neurons, such as Parkinson's disease (PD), might be facilitated by a better understanding of how these neurons are specified, differentiated and maintained in vivo. This knowledge might help to instruct efforts to generate mDA neurons in vitro, which holds promise not only for cell replacement therapy, but also for disease modeling and drug discovery. In this Primer, we will focus on recent developments in understanding the molecular mechanisms that regulate the development of mDA neurons in vivo, and how they have been used to generate human mDA neurons in vitro from pluripotent stem cells or from somatic cells via direct reprogramming. Current challenges and future avenues in the development of a regenerative medicine for PD will be identified and discussed.

21 May 2015 in Stem Cells
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Journal Article
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Mark DenhamMark Denham
Mark Denham
KHKouichi Hasegawa
Kouichi Hasegawa
TMTrevelyan Menheniott
Trevelyan Menheniott
BRBen Rollo
Ben Rollo
DZDongcheng Zhang
Dongcheng Zhang
MDMirella Dottori
Mirella Dottori
The caudal neural plate is a distinct region of the embryo that gives rise to major progenitor lineages of the developing central and peripheral nervous system, including neural crest and floor plate cells. We show that dual inhibition of the glycogen synthase kinase 3β and activin/nodal pathways by small molecules differentiate human pluripotent stem cells (hPSCs) directly into a preneuroepithelial progenitor population we named “caudal neural progenitors” (CNPs). CNPs coexpress caudal neural plate and mesoderm markers, and, share high similarities to embryonic caudal neural plate cells in their lineage differentiation potential. Exposure of CNPs to BMP2/4, sonic hedgehog, or FGF2 signaling efficiently directs their fate to neural crest/roof plate cells, floor plate cells, and caudally specified neuroepithelial cells, respectively. Neural crest derived from CNPs differentiated to neural crest derivatives and demonstrated extensive migratory properties in vivo. Importantly, we also determined the key extrinsic factors specifying CNPs from human embryonic stem cell include FGF8, canonical WNT, and IGF1. Our studies are the first to identify a multipotent neural progenitor derived from hPSCs, that is the precursor for major neural lineages of the embryonic caudal neural tube. Stem Cells 2015;33:1759–1770


3 August 2012 in Journal of Neurochemistry
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Journal Article
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JXJunhua Xiao
Junhua Xiao
AFAnita H Ferner
Anita H Ferner
AWAgnes W Wong
Agnes W Wong
Mark DenhamMark Denham
Mark Denham
TKTrevor J Kilpatrick
Trevor J Kilpatrick
SMSimon S Murray
Simon S Murray

21 August 2012 in Stem Cells
Verified
Journal Article
Open access
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Mark DenhamMark Denham
Mark Denham
CBChris Bye
Chris Bye
JLJessie Leung
Jessie Leung
BCBrock J. Conley
Brock J. Conley
LTLachlan H. Thompson
Lachlan H. Thompson
MDMirella Dottori
Mirella Dottori
The floor plate is one of the major organizers of the developing nervous system through its secretion of sonic hedgehog (Shh). Although the floor plate is located within the neural tube, the derivation of the floor plate during development is still debatable and some studies suggest that floor plate cells are specified by Shh in a temporarily restricted window different to neuroepithelial cells. Using human embryonic stem cells (hESC) as a model of neurogenesis, we sought to determine how floor plate cells may be temporarily specified by SHH signaling during human embryogenesis. We found that inhibition of both GSK3β and activin/nodal pathways in hESC induces a cellular state of SOX2+/PAX6− expression, we describe as “pre-neuroepithelial.” Exposure of SHH during this pre-neuroepithelial period causes the expression of GLI transcription factors to function as activators and consequently upregulate expression of the floor plate marker, FOXA2, while also supressing PAX6 expression to inhibit neuroepithelial fate. FOXA2+ cells were able to efficiently generate mesencephalic dopaminergic neurons, a floor plate derivative. Overall, this study demonstrates a highly efficient system for generating floor plate cells from hESC and, most importantly, reveals that specification of floor plate cells is temporally dependent, whereby it occurs prior to the onset of PAX6 expression, within a pre-neuroepithelial stage. STEM CELLS2012;30:2400–2411

28 September 2020 in Current Protocols in Molecular Biology
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Journal Article
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KGKatherine P. Gill
Katherine P. Gill
Mark DenhamMark Denham
Mark Denham
The lentivirus system enables efficient genetic modification of both dividing and non‐dividing cells and therefore is a useful tool for elucidating developmental processes and disease pathogenesis. The development of third‐generation lentiviruses has resulted in improved biosafety, low immunogenicity, and substantial packaging capabilities. However, because third‐generation lentiviruses require successful co‐transfection with four plasmids, this typically means that lower titers are attained. This is problematic, as it is often desirable to produce purified lentiviruses with high titers (>1 × 108TU/ml), especially for in vivo applications. The manufacturing process for lentiviruses involves several critical experimental factors that can influence titer, purity, and transduction efficiency. Here, we describe a straightforward, stepwise protocol for the reproducible manufacture of high‐titer third‐generation lentiviruses (1 × 108to 1 × 109TU/ml). This optimized protocol enhances transgene expression by use of Lipofectamine transfection and optimized serum replacement medium, a single ultracentrifugation step, use of a sucrose cushion, and addition of a histone deacetylation inhibitor. Furthermore, we provide alternate methods for titration analyses, including functional and genomic integration analyses, using common laboratory techniques such as FACS as well as genomic DNA extraction and qPCR. These optimized methods will be beneficial for investigating developmental processes and disease pathogenesis in vitro and in vivo. © 2020 The Authors.Basic Protocol 1: Lentivirus productionSupport Protocol: Lentivirus concentrationBasic Protocol 2: Lentivirus titrationAlternate Protocol 1: Determination of viral titration by FACS analysisAlternate Protocol 2: Determination of viral titration by genome integration analysis