Gilmer Valdes

Dr. Gilmer Valdes


Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
17 August 2017 in Journal of Applied Clinical Medical Physics
Verified
Journal Article
Open access
PDF file
GVGilmer Valdes
Gilmer Valdes
MCMaria F. Chan
Maria F. Chan
SLSeng Boh Lim
Seng Boh Lim
RSRyan Scheuermann
Ryan Scheuermann
JDJoseph O. Deasy
Joseph O. Deasy
TSTimothy D. Solberg
Timothy D. Solberg
Purpose: To validate a machine learning approach to Virtual intensity‐modulated radiation therapy (IMRT) quality assurance (QA) for accurately predicting gamma passing rates using different measurement approaches at different institutions.Methods: A Virtual IMRT QA framework was previously developed using a machine learning algorithm based on 498 IMRT plans, in which QA measurements were performed using diode‐array detectors and a 3%local/3 mm with 10% threshold at Institution 1. An independent set of 139 IMRT measurements from a different institution, Institution 2, with QA data based on portal dosimetry using the same gamma index, was used to test the mathematical framework. Only pixels with ≥10% of the maximum calibrated units (CU) or dose were included in the comparison. Plans were characterized by 90 different complexity metrics. A weighted poison regression with Lasso regularization was trained to predict passing rates using the complexity metrics as input.Results: The methodology predicted passing rates within 3% accuracy for all composite plans measured using diode‐array detectors at Institution 1, and within 3.5% for 120 of 139 plans using portal dosimetry measurements performed on a per‐beam basis at Institution 2. The remaining measurements (19) had large areas of low CU, where portal dosimetry has a larger disagreement with the calculated dose and as such, the failure was expected. These beams need further modeling in the treatment planning system to correct the under‐response in low‐dose regions. Important features selected by Lasso to predict gamma passing rates were as follows: complete irradiated area outline (CIAO), jaw position, fraction of MLC leafs with gaps smaller than 20 or 5 mm, fraction of area receiving less than 50% of the total CU, fraction of the area receiving dose from penumbra, weighted average irregularity factor, and duty cycle.Conclusions: We have demonstrated that Virtual IMRT QA can predict passing rates using different measurement techniques and across multiple institutions. Prediction of QA passing rates can have profound implications on the current IMRT process.

30 March 2018 in Medical Physics
Verified
Journal Article
Closed access
PDF file
YIYannet Interian
Yannet Interian
VRVincent Rideout
Vincent Rideout
VKVasant P. Kearney
Vasant P. Kearney
EGEfstathios Gennatas
Efstathios Gennatas
OMOlivier Morin
Olivier Morin
GVGilmer Valdes
Gilmer Valdes

30 November 2016 in Scientific Reports
Verified
Journal Article
Open access
GVGilmer Valdes
Gilmer Valdes
JLJose Marcio Luna
Jose Marcio Luna
EEEric Eaton
Eric Eaton
CSCharles Simone
Charles Simone
LULyle H. Ungar
Lyle H. Ungar
TSTimothy D. Solberg
Timothy D. Solberg
Machine learning algorithms that are both interpretable and accurate are essential in applications such as medicine where errors can have a dire consequence. Unfortunately, there is currently a tradeoff between accuracy and interpretability among state-of-the-art methods. Decision trees are interpretable and are therefore used extensively throughout medicine for stratifying patients. Current decision tree algorithms, however, are consistently outperformed in accuracy by other, less-interpretable machine learning models, such as ensemble methods. We present MediBoost, a novel framework for constructing decision trees that retain interpretability while having accuracy similar to ensemble methods, and compare MediBoost’s performance to that of conventional decision trees and ensemble methods on 13 medical classification problems. MediBoost significantly outperformed current decision tree algorithms in 11 out of 13 problems, giving accuracy comparable to ensemble methods. The resulting trees are of the same type as decision trees used throughout clinical practice but have the advantage of improved accuracy. Our algorithm thus gives the best of both worlds: it grows a single, highly interpretable tree that has the high accuracy of ensemble methods.

1 December 2017 in Radiotherapy and Oncology
Verified
Journal Article
Closed access
GVGilmer Valdes
Gilmer Valdes
CSCharles Simone
Charles Simone
JCJosephine Chen
Josephine Chen
ALAlexander Lin
Alexander Lin
SYSaeHee K. Yom
SaeHee K. Yom
TSTimothy D. Solberg
Timothy D. Solberg

16 September 2019 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Open access
PDF file
JLJose Marcio Luna
Jose Marcio Luna
EGEfstathios D. Gennatas
Efstathios D. Gennatas
LULyle H. Ungar
Lyle H. Ungar
EEEric Eaton
Eric Eaton
EDEric S. Diffenderfer
Eric S. Diffenderfer
GVGilmer Valdes
Gilmer Valdes
Significance: As machine learning applications expand to high-stakes areas such as criminal justice, finance, and medicine, legitimate concerns emerge about high-impact effects of individual mispredictions on people’s lives. As a result, there has been increasing interest in understanding general machine learning models to overcome possible serious risks. Current decision trees, such as Classification and Regression Trees (CART), have played a predominant role in fields such as medicine, due to their simplicity and intuitive interpretation. However, such trees suffer from intrinsic limitations in predictive power. We developed the additive tree, a theoretical approach to generate a more accurate and interpretable decision tree, which reveals connections between CART and gradient boosting. The additive tree exhibits superior predictive performance to CART, as validated on 83 classification tasks.

6 December 2021 in Annual Review of Public Health
Verified
Journal Article
Open access
PWPaul Wesson
Paul Wesson
YHYulin Hswen
Yulin Hswen
GVGilmer Valdes
Gilmer Valdes
KSKristefer Stojanovski
Kristefer Stojanovski
MHMargaret Anne Handley
Margaret Anne Handley
The big data revolution presents an exciting frontier to expand public health research, broadening the scope of research and increasing the precision of answers. Despite these advances, scientists must be vigilant against also advancing potential harms toward marginalized communities. In this review, we provide examples in which big data applications have (unintentionally) perpetuated discriminatory practices, while also highlighting opportunities for big data applications to advance equity in public health. Here, big data is framed in the context of the five Vs (volume, velocity, veracity, variety, and value), and we propose a sixth V, virtuosity, which incorporates equity and justice frameworks. Analytic approaches to improving equity are presented using social computational big data, fairness in machine learning algorithms, medical claims data, and data augmentation as illustrations. Throughout, we emphasize the biasing influence of data absenteeism and positionality and conclude with recommendations for incorporating an equity lens into big data research.