Dmitrii Chebanov

Mr. Dmitrii Chebanov


Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 November 2023 in Frontiers in Bioinformatics
Verified
Journal Article
Open access
DCDmitrii Chebanov
Dmitrii Chebanov
VMVsevolod A. Misyurin
Vsevolod A. Misyurin
ISIrina Zh. Shubina
Irina Zh. Shubina
In this study, we present an algorithmic framework integrated within the created software platform tailored for the discovery of novel small-molecule anti-tumor agents. Our approach was exemplified in the context of combatting lung cancer. In the initial phase, target identification for therapeutic intervention was accomplished. Leveraging deep learning, we scrutinized gene expression profiles, focusing on those associated with adverse clinical outcomes in lung cancer patients. Augmenting this, generative adversarial neural (GAN) networks were employed to amass additional patient data. This effort yielded a subset of genes definitively linked to unfavorable prognoses. We further employed deep learning to delineate genes capable of discriminating between normal and tumor tissues based on expression patterns. The remaining genes were earmarked as potential targets for precision lung cancer therapy. Subsequently, a dedicated module was formulated to predict the interactions between inhibitors and proteins. To achieve this, protein amino acid sequences and chemical compound formulations engaged in protein interactions were encoded into vectorized representations. Additionally, a deep learning-based component was developed to forecast IC50 values through experimentation on cell lines. Virtual pre-clinical trials employing these inhibitors facilitated the selection of pertinent cell lines for subsequent laboratory assays. In summary, our study culminated in the derivation of several small-molecule formulas projected to bind selectively to specific proteins. This algorithmic platform holds promise in accelerating the identification and design of anti-tumor compounds, a critical pursuit in advancing targeted cancer therapies.

30 December 2022 in Diagnostics
Verified
Journal Article
Open access
PDF file
ЛФлеонид фишер
леонид фишер
OFOlga Fisher
Olga Fisher
DCDmitrii Chebanov
Dmitrii Chebanov
SVSergey Vesnin
Sergey Vesnin
AGAlexey Goltsov
Alexey Goltsov
IGIgor I Goryanin
Igor I Goryanin
Breast cancer prevention is an important health issue for women worldwide. In this study, we compared the conventional breast cancer screening exams of mammography and ultrasound with the novel approaches of passive microwave radiometry (MWR) and microRNA (miRNA) analysis. While mammography screening dynamics could be completed in 3–6 months, MWR provided a prediction in a matter of weeks or even days. Moreover, MWR has the potential of being complemented with miRNA diagnostics to further improve its predictive quality. These novel techniques can be used alone or in conjunction with more established techniques to improve early breast cancer diagnosis.

12 September 2023 in medRxiv
Verified
Preprint
Open access
PDF file
DCDmitrii Chebanov
Dmitrii Chebanov
VMVsevolod A Misyurin
Vsevolod A Misyurin
There is a problem of clinical trial failure, as each new drug should surpass the effectiveness of existing treatment regimens, which becomes increasingly challenging over time. Another significant issue is treating patients who have developed resistance to the current therapies. Essentially, the use of drug combinations or off-label drug use, where the indication does not match the diagnosis, is akin to an experiment, as there is insufficient data on which drug or combination to use. This work proposes an approach utilizing computer modeling of patients using gene expression and clinical data. Deep learning and generative adversarial networks are employed as modeling tools. The training data for the algorithms were sourced from publicly available databases such as TCGA and Drugbank. The modeling is based on the hypothesis of similarity between patients, similarity between drugs, as well as the similarity between individual organs and patient tissues with cell lines, with similarity being computed mathematically. As a result, a patient model is created, where the input consists of drugs and their combinations, and the output provides survival probability values. These model data can be generated in any required quantity with generative adversarial networks (GAN) technology to create observation and control groups. Consequently, it becomes possible to simulate clinical trials, forecasting their outcomes, and, most importantly, optimizing the trial parameters to maximize the likelihood of success.

1 July 2020 in Automatic Documentation and Mathematical Linguistics
Verified
Journal Article
Closed access
PDF file
DCDmitrii Chebanov
Dmitrii Chebanov
The software implementation of the procedures of the JSM method of automated support of scientific research, which has been repeatedly used to solve proble

1 September 2020 in Automatic Documentation and Mathematical Linguistics
Verified
Journal Article
Closed access
PDF file
DCDmitrii Chebanov
Dmitrii Chebanov
IMIrina Mikhaylova
Irina Mikhaylova
A brief overview of artificial intelligence techniques applied to medical data related to oncology is provided. The actual goals of using artificial intell

19 October 2022 in Preprints.org
Verified
Preprint
Open access
PDF file
SVSergey Vesnin
Sergey Vesnin
DCDmitrii Chebanov
Dmitrii Chebanov
ЛФлеонид фишер
леонид фишер
OFOlga Fisher
Olga Fisher
MDMike Dixon
Mike Dixon
IGIgor I Goryanin
Igor I Goryanin
Breast cancer prevention is very important for a woman's health worldwide. We have demonstrated a correlation between mammography and ultrasound with diagnoses using passive microwave radiometry (MWR) and a miRNA oncopanel. While mammography screening dynamics could be completed in 3-6 months, MWR will provide us with a prediction in a matter of weeks or even days with the potential for complementary miRNA diagnostics. An early breast cancer diagnosis may be accomplished using either one of these novel techniques alone or in conjunction with more established techniques