Long-term fertilization can result in changes in the nitrogen (N) cycle in maize rhizosphere soil. However, there have been few reports on the impacts of plant–soil–microbe regulatory mechanisms on the N cycle in soil. In this study, soil samples were collected from a long-term experimental site located at Jilin Agricultural University, Changchun City, Jilin Province, Northeast China. We then analyzed the changes in the functional genes related to the N cycle, soil enzyme activity, and maize root exudates under long-term fertilizer application using metagenomics and liquid chromatography analysis. We aimed to investigate the response of the N cycle to long-term fertilizers, the interaction among plant, soil, and microbes, and the effect of the plant–soil–microbe system on the N cycle. Long-term fertilization had a significant effect on soil N contents, N₂O emissions, and enzyme activity related to the N cycle in maize rhizosphere soil. The functional genes of the N cycle were mainly enriched in the N degradation pathway in maize rhizosphere soil. N fertilizer application decreased the abundance of functional genes related to N fixation and degradation, denitrification, and assimilatory nitrate reduction (ANRA) and increased the abundance of functional genes participating in dissimilatory nitrate reduction (DNRA) and anaerobic ammonia oxidation/hydroxylamine oxidation. The soil environment was positively related to soil enzyme activity and negatively related to the microbial community composition and amino acids in root exudates. The contribution rate of microorganisms to the N cycle was the highest (r² = 0.900), followed by amino acids (r² = 0.836) and the soil environment (r² = 0.832). Therefore, we concluded that N fertilizer is the main factor limiting the soil N cycle and that microorganisms are the main factor regulating the N cycle in the plant–soil–microorganism system.

Returning crop straw to the soil is an effective measure to increase soil fertility and maintain crop yield in agroecosystems. In this study, we conducted a 34-year field experiment (1984–2017) to investigate the relationships among the impacts of straw return on soil nutrients, phosphorus (P) fractions, phosphorus transformation-related functional microbial communities, and key genes in black soil. The results of the soil chemical properties showed that straw return could slow the decline in soil pH and increase soil nutrients, i.e., soil organic carbon (SOC), available K (AK), and available P (AP) concentrations, with the straw addition (PKS) treatment resulting in the highest soil AP and AK contents. Compared with conventional fertilizer (NPK) and conventional fertilizer with straw (NPKS), straw return alone (S) significantly increased the soil AP and AK contents by 1.1–42.8 and 38.3–114.3 mg/kg (p < 0.05), respectively. The results of the phosphorus fraction experiment indicated that long-term straw return promoted labile and moderately stable phosphorus content by altering the composition and increasing the relative abundances of functional genes regulating soil P activation (ugpQ, ppk, phoD, and gcd). The compositional changes in the phosphorus-cycling-related functional genes of the soil were affected mostly by soil total P (TP), AK, and NO₃⁻-N, whereas pH, SOC, and available N (AN) were the main environmental factors influencing the phosphorus-cycling-related microbial community composition. These direct measurements provide insight into the soil phosphorus fractions, phosphorus-cycling-related functional genes, and microbial communities associated with straw returning, which enhances our understanding of the chemical and biogeochemical behavior of soil phosphorus upon straw incorporation.

Straw returning enhances soil fertility and increases corn yield, but the impact on soil fertility varies with different incorporation methods. To explore the optimal straw-returning method, this study, based on a long-term field experiment, investigated the following different corn-straw-returning methods: deep plowing and straw returning (B), rotary tillage and straw returning (RT), crushing and mixing straw returning (TM), pulverized cover straw returning (C), high-stubble-retention straw returning (LHS), strip cover (S), and flat no-tillage without straw returning (CK). High-throughput sequencing technology was employed to analyze the soil bacterial community composition and structural changes under different straw-returning methods. The study further explored the relationships between the soil bacterial community and nutrient content. The results indicated that different straw-returning methods altered the composition and structure of the soil bacterial community. The TM treatment significantly increased the richness and diversity of the soil bacterial communities. Shredding and covering (C and TM) effectively improved the soil nutrient content and bacterial community structure. In the C treatment, the abundance of Blastococcus, Nocardioides, and Microvirga increased the most, by 241.02%, 77.79%, and 355.08%, respectively, compared with CK. In the TM treatment, Pseudarthrobacter showed the highest abundance, increasing by 343.30%. The genes involved in soil carbon hydrolysis (pulA), nitrification (hao), organic nitrogen degradation and synthesis (gudB), and the nitrogen limitation response (glnR) significantly decreased by 56.21%, 78.75%, 66.46%, and 67.40%, respectively, in the C treatment. The genes involved in soil carbon hydrolysis (IMA), carbon fixation (pccB-A), methane metabolism (moxF), nitrate reduction in soil (nirD), organic nitrogen degradation and synthesis (gdh, ureAB, ureE), and phosphate absorption (glpT) significantly increased by 93.37%, 92.68%, 95.00%, 23.42%, 35.40%, 114.21%, 59.14%, and 75.86%, respectively, in the C treatment. The nitrate reduction gene (nrfA) significantly increased by 80.27% in the TM treatment. Therefore, we concluded that straw primarily stimulates the activity of bacterial communities and regulates the bacterial community by changing the relative abundance of the soil microorganisms and functional genes, thereby improving the soil nutrient content. This study considered pulverized cover straw returning and crushing and mixing straw returning to be the most reasonable methods.

Soil improvement methods can result in changes in the microbial community in blueberry soil. However, there have been few reports on the impacts of different soil improvement methods on the microbial function, particularly on endophytic microbe. In this study, we analyzed the response of microbial community composition, microbial function and nitrogen (N) cycle to different improvement methods using high throughput sequencing. We aimed to investigate the best soil improvement method from a microbial perspective. The results showed that the highest microbial diversity was observed in the T4 treatment (peat combined with mushroom bran), followed by the T2 treatment (peat combined with acidified rice husk) both in the rhizosphere and roots. The dominant phyla were Proteobacteria and Actinobacteria, which were most abundance in the T4 and T1 (peat combined with sulfur) treatments in the rhizosphere soil, respectively, but showed the opposite trend in the root endophytic bacterial community. Interestingly, Acidobacterium and Paludibaculum, belonging to the Acidobacteria phylum, were found to have the highest influence according to the correlation network analysis. And these bacteria were most abundant in the T2 treatment in the rhizosphere soil. The rhizosphere soil microbial communities were clustered into two categories: one for T1 and T2 treatments, and another for T3 (mushroom bran) and T4 treatments. Compared to the other treatments, the T1 treatment had the most significant impact on microbial functional pathways in the blueberry roots. T2 treatment promoted the growth of N fixation functional bacteria both in the rhizosphere soil and roots. At the module level, the T2 treatment increased the relative abundance of N fixation and decreased the relative abundance of assimilating nitrate reduction reaction (ANRA), dissimilating nitrate reduction reaction (DNRA), denitrification and completed nitrification in the blueberry rhizosphere soil. Additionally, the T2 treatment increased the abundance of root endophytic microbes involved in N fixation. Overall, our findings suggest that the addition of peat combined with acidified rice husk is the optimal soil improvement method for blueberry cultivation.

The phaeozem in Northeast China is rich in soil organic carbon (SOC). However, the excessive and inefficient application of chemical fertilizers, particularly nitrogen fertilizers, has primarily led to a decrease in soil pH in this region. Currently, the relationship between soil pH and the stability of soil organic carbon (SOC) remains ambiguous. This study, conducted over 13 years of field experiments, focused on soils exhibiting varying degrees of pH resulting from different nitrogen application rates. The research employed aggregate classification, ¹³C nuclear magnetic resonance spectroscopy, and analysis of microbial community composition to investigate the alterations in the SOC stabilization mechanisms under varying nitrogen application levels. Our results demonstrated that the decline in soil pH led to reductions in macroaggregates (>2 mm) and the soil aggregate destruction rate (PAD) by 4.8–14.6%, and in soil aggregate unstable agglomerate index (E_LT) by 9.7–13.4%. The mean weight diameter (MWD) and geometric mean diameter (GMD) exhibited significant declines (p < 0.05) with decreasing pH levels. According to the ¹³C NMR analysis, the SOC was predominantly composed of O-alkyl carbon and aromatic carbon. At a pH of 5.32, the Alip/Arom values decreased, while the molecular structure of SOC became more complex under different levels of pH. In addition, the increase in [Fe(Al)-OC] (31.4–71.9%) complex indicates a shift in the stability of organic carbon from physical protection to organic mineral binding. Declining soil pH significantly reduced the diversity of soil microbial communities and promoted a shift toward copiotrophic microbial groups. Overall, declining soil pH resulted in a decline in soil aggregate stability and an increase in SOC aromaticity. This drove the shift in the stabilization mechanism of SOC in the black soil ecosystem of meadows in Northeast China from physical protection to chemical stability.