Yunen Liu

Dr. Yunen Liu


Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 August 2023 in Frontiers in Immunology
Verified
Journal Article
Open access
QZQian Zhang
Qian Zhang
YLYang Liu
Yang Liu
XWXinyu Wang
Xinyu Wang
CZCheng Zhang
Cheng Zhang
MHMingxiao Hou
Mingxiao Hou
YLYunen Liu
Yunen Liu
Introduction: Colorectal cancer (CRC) is a highly heterogeneous cancer. The molecular and cellular characteristics differ between the colon and rectal cancer type due to the differences in their anatomical location and pathological properties. With the advent of single-cell sequencing, it has become possible to analyze inter- and intra-tumoral tissue heterogeneities.Methods: A comprehensive CRC immune atlas, comprising 62,398 immune cells, was re-structured into 33 immune cell clusters at the single-cell level. Further, the immune cell lineage heterogeneity of colon, rectal, and paracancerous tissues was explored. Simultaneously, we characterized the TAM phenotypes and analyzed the transcriptomic factor regulatory network of each macrophage subset using SCENIC. In addition, monocle2 was used to elucidate the B cell developmental trajectory. The crosstalk between immune cells was explored using CellChat and the patterns of incoming and outgoing signals within the overall immune cell population were identified. Afterwards, the bulk RNA-sequencing data from The Cancer Genome Atlas (TCGA) were combined and the relative infiltration abundance of the identified subpopulations was analyzed using CIBERSORT. Moreover, cell composition patterns could be classified into five tumor microenvironment (TME) subtypes by employing a consistent non-negative matrix algorithm. Finally, the co-expression and interaction between SPP1+TAMs and Treg cells in the tumor microenvironment were analyzed by multiplex immunohistochemistry.Results: In the T cell lineage, we found that CXCL13+T cells were more widely distributed in colorectal cancer tissues, and the proportion of infiltration was increased. In addition, Th17 was found accounted for the highest proportion in CD39+CD101+PD1+T cells. Mover, Ma1-SPP1 showed the characteristics of M2 phenotypes and displayed an increased proportion in tumor tissues, which may promote angiogenesis. Plasma cells (PCs) displayed a significantly heterogeneous distribution in tumor as well as normal tissues. Specifically, the IgA+ PC population could be shown to be decreased in colorectal tumor tissues whereas the IgG+ PC one was enriched. In addition, information flow mediated by SPP1 and CD44, regulate signaling pathways of tumor progression. Among the five TME subtypes, the TME-1 subtype displayed a markedly reduced proportion of T-cell infiltration with the highest proportion of macrophages which was correlated to the worst prognosis. Finally, the co-expression and interaction between SPP1+TAMs and Treg cells were observed in the CD44 enriched region.Discussion: The heterogeneity distribution and phenotype of immune cells were analyzed in colon cancer and rectal cancer at the single-cell level. Further, the prognostic role of major tumor-infiltrating lymphocytes and TME subtypes in CRC was evaluated by integrating bulk RNA. These findings provide novel insight into the immunotherapy of CRC.

21 April 2021 in Frontiers in Cardiovascular Medicine
Verified
Journal Article
Open access
PDF file
HZHaoyuan Zheng
Haoyuan Zheng
LSLin Shi
Lin Shi
CTChangci Tong
Changci Tong
YLYunen Liu
Yunen Liu
MHMingxiao Hou
Mingxiao Hou
Circular RNA (circRNA) is a subclass of non-coding RNAs that enables the circular transcripts resistant to the exonuclease digestion. Iron homeostasis is essential for the body to maintain normal physiological functions. At present, the relationship among circRNA, iron metabolism and heart failure remains largely unknown. This study aimed to explore the regulatory mechanism of circRNA and iron metabolism in heart failure. We obtained circRNA, miRNA and mRNA data from public databases and built a ceRNA network. The prediction results were verified in the myocardial tissues of pressure overload-induced heart failure mice through the use of histopathological staining methods, iron and malondialdehyde (MDA) measurement tests, quantitative real-time PCR (qRT-PCR), Western blot analysis and luciferase reporter assay. A total of 4 genes related to iron metabolism and oxidative stress were identified, and a ceRNA network involving 7 circRNAs, 7 miRNAs, and 4 mRNAs was constructed using bioinformatics tools. The results of qRT-PCR and Western blot analyses indicated that the expression level of FTH1 was similar with that predicted by bioinformatics analysis. Echocardiographic measurement showed that heart failure mice have lower fractional shortening and ejection fraction. Moreover, the myocardium of heart failure mice displayed obvious fibrosis as well as increased levels of iron and MDA compared to control mice. Besides, circSnx12 could act as an endogenous sponge to bind with miR-224-5p, and the 3'UTR region of FTH1 also had miRNA binding sites. A circRNA-miRNA-mRNA regulatory network was successfully constructed by identifying differentially expressed genes related to iron metabolism. This new approach reveals potential circRNA targets for the treatment of heart failure.

1 July 2019 in Chemico-Biological Interactions
Verified
Journal Article
Closed access
LSLinlin Shang
Linlin Shang
LPLv Pin
Lv Pin
SZShanshan Zhu
Shanshan Zhu
XZXiaohang Zhong
Xiaohang Zhong
YZYubiao Zhang
Yubiao Zhang
MHMingxiao Hou
Mingxiao Hou

15 February 2018 in BMC Cardiovascular Disorders
Verified
Journal Article
Open access
PDF file
PCPeifang Cong
Peifang Cong
YLYunen Liu
Yunen Liu
NLNannan Liu
Nannan Liu
YZYubiao Zhang
Yubiao Zhang
CTChangci Tong
Changci Tong
MHMingxiao Hou
Mingxiao Hou
Exposure to cold weather is associated with infaust cardiovascular responses, including myocardial infarction and arrhythmias. However, the exact mechanisms of these adverse changes in the myocardium under cold stress are unknown. This study was designed to investigate the mechanisms of cardiac injury induced by cold stress in mice. The mice were randomly divided into three groups, normal control (no handling), 1-week cold stress and 2-week cold stress. We observed physiological changes of the mice and morphological changes of myocardium tissues, and we measured the changes of 3′-nitrotyrosine and 4-hydroxynonenal, the expression levels of superoxide dismutase-1, superoxide dismutase-2, Bax, Bad, Bcl-2, Nuclear factor erythroid-derived 2-like 2 (Nrf2) and Kelch like-ECH-associated protein 1 (Keap1) in myocardium by western blot. Besides, we detected mRNA of superoxide dismutase-1, superoxide dismutase-2, Bax, Bad, Bcl-2, Nrf2 and Keap1 by real-time PCR. One-way analysis of variance, followed by LSD-t test, was used to compare each variable for differences among the groups. Echocardiography analyses demonstrated left ventricle dysfunction in the groups receiving cold stress. Histological analyses witnessed inflammation, vacuolar and eosinophilic degeneration occurred in left ventricle tissues. Western blotting results showed increased 3′-nitrotyrosine and 4-hydroxynonenal and decreased antioxidant enzymes (superoxide dismutase-1 and superoxide dismutase-2) in the myocardium. Expression of Nrf2 and Keap1 followed a downward trend under cold exposure, as indicated by western blotting and real-time PCR. Expression of anti-apoptotic protein Bcl-2 also showed the same trend. In contrast, expression of pro-apoptotic proteins Bax and Bad followed an upward trend under cold exposure. The results of real-time PCR were consistent with those of western blotting. These findings were very significant, showing that cold exposure induced cardiac injury by inhibiting the Nrf2-Keap1 signaling pathway.

1 January 2020 in Theranostics
Verified
Journal Article
Open access
YTYao Tang
Yao Tang
YJYuejia Ji
Yuejia Ji
CYChenglin Yi
Chenglin Yi
DCDi Cheng
Di Cheng
BWBin Wang
Bin Wang
ZNZhihong Nie
Zhihong Nie
Rationale: Nanoscale vehicles responsive to abnormal variation in tumor environment are promising for use in targeted delivery of therapeutic drugs specifically to tumor sites. Herein, we report the design and fabrication of self-accelerating H2O2-responsive plasmonic gold nanovesicles (GVs) encapsulated with tirapazamine (TPZ) and glucose oxidase (GOx) for synergistic chemo/starving therapy of cancers.

3 February 2023 in Journal of Physics D: Applied Physics
Verified
Journal Article
Closed access
Zifeng WangZifeng Wang
Zifeng Wang
MZMengying Zhu
Mengying Zhu
Dingxin LiuDingxin Liu
Dingxin Liu
LLLinbo Liu
Linbo Liu
XWXiangyu Wang
Xiangyu Wang
MRMingzhe Rong
Mingzhe Rong
N2O5, a reactive species produced by air discharge plasma, has recently attracted much attention. Due to its high reactivity and solubility, N2O5 is a key molecule in nitrogen fixation processes and exhibits promising prospects in plasma biomedicine. However, thus far, it is not well known how to produce N2O5 efficiently and then maintain its concentration under the action of fast removal reactions. In view of this, N2O5 production by dielectric barrier discharge (DBD) alone and by the combination of DBD and gliding arc discharge is compared in this paper. It is found that the combination method can yield over three times the concentration of N2O5 compared to the single DBD method with the optimum discharge power. Moreover, the concentration of N2O5 in the effluent gas can be maintained once O3 also exists because O3 can continually produce N2O5 to compensate for its reduction. Finally, the sterilization effects of both the plasma effluent gas and plasma-activated water have trends similar to the trend of the gaseous N2O5 concentration, implying that N2O5 plays an important role in sterilization. This paper enhances the understanding of N2O5 chemistry in air discharge plasma and provides an effective way to produce and maintain N2O5 for subsequent applications.